Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  482 bits (1240), Expect = e-141
 Identities = 234/360 (65%), Positives = 291/360 (80%), Gaps = 5/360 (1%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML+YI RRLLL++PTL+ I+ INF IIQ APGGPVEQ IA+LEG   G   R  GGG EV
Sbjct: 1   MLAYIFRRLLLIIPTLFGILLINFVIIQAAPGGPVEQMIAKLEG-FEGATSRIAGGGAEV 59

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
           +       S Y+G++GLDP +V+EI R +GFDK   ER + M+K+YA  +FG+S FR   
Sbjct: 60  SVAG----SSYRGAQGLDPALVKEIERMYGFDKSAPERLWIMIKNYAHLDFGDSFFRDAK 115

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           VIDLI E++PVSISLGLWSTL++YL+SIPLGI+KA  HGS FDVW+S+ +I+GYAIP FL
Sbjct: 116 VIDLIKEKMPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAIPSFL 175

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240
           FAI+LI++FA G+YF WFPLRGL S+NF  L    ++LDYFWHL LP  A+VIG FAT++
Sbjct: 176 FAILLIVVFAGGSYFDWFPLRGLTSNNFDELSMGGKILDYFWHLALPVTALVIGNFATMT 235

Query: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300
           +LTKNSFLDEINKQYVVTA+AKGL   R+LY HVFRNAML++IAGFPSAFI IFFTGS+L
Sbjct: 236 LLTKNSFLDEINKQYVVTAKAKGLTRHRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLL 295

Query: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFEAR 360
           +EV+FSL+G+GL+ FEA I RDYP+VF +L+I TLLGL++ +I DLTY +VDPRIDFE+R
Sbjct: 296 VEVIFSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRIDFESR 355