Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  147 bits (371), Expect = 4e-40
 Identities = 100/370 (27%), Positives = 172/370 (46%), Gaps = 53/370 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M S+I RRL L++PT + I  + F +I++ PG PVE  +                     
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMM--------------------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G R +DP++  +   R G +KP++ +Y   +   A  + GESL     
Sbjct: 40  ------------GERRVDPEMHAQAMERLGLNKPLYAQYLDYIGKLAQGDLGESLRTRES 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V        P ++ L + + L   ++ +  G+  A+  GS FD     V + GY++P F 
Sbjct: 88  VWTEFSSLFPATLELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGVSLAGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRG---------------LVSDNFASLPWYQQVLDYFWHLT 225
           + +ILI+ F+      W P+ G               L+    A  P     LD   HL 
Sbjct: 148 WGLILIMFFSVS--LGWTPVSGRIDLLYDIEPKTGFMLIDTLLADEPG--AFLDALHHLI 203

Query: 226 LPTLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAG 285
           LP + +     A ++ +T++S L+ + + Y+ TA+AKGL   R+++ H  RNA++ ++  
Sbjct: 204 LPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGLSPSRVVFVHGLRNALIPVLT- 262

Query: 286 FPSAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISD 345
                +     G++L E +FS  GIG    EA   RDYP+V + + ++  L +L++ + D
Sbjct: 263 VVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFVVD 322

Query: 346 LTYMWVDPRI 355
           + Y + +PRI
Sbjct: 323 ILYGFANPRI 332