Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  161 bits (407), Expect = 2e-44
 Identities = 101/355 (28%), Positives = 182/355 (51%), Gaps = 53/355 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML ++LRRL + +     +  I+F ++ ++  G +  AI                GG E 
Sbjct: 1   MLGFLLRRLGIAICVAITVSVISFSLLHLS--GDLATAI----------------GGPEA 42

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
            +                 + +E+I  ++G DKP+  +YF  L D    + G+S F    
Sbjct: 43  TS-----------------EQIEQIRVQYGLDKPLPTQYFNWLGDLLRLDLGDSFFFQES 85

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V +L+  RLP+++ LG  +  +  L++IPLG+  A+   +  D  + ++ ++G A+P F 
Sbjct: 86  VYNLVASRLPITLGLGAMALGIALLVAIPLGVLAAVKRDTWVDRLALSIAVLGQAMPSFW 145

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240
           FA++LI++FA      W P    VS N   L           H  +P +A+       + 
Sbjct: 146 FALMLIVVFAV--TLKWLP----VSGNSTLL-----------HFVMPAIALGYYATPAIM 188

Query: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300
            LT+   LD ++  Y+ TARAKGL   R+L+KH  RNA++ ++A   +        GS++
Sbjct: 189 RLTRAGMLDVLSSDYIRTARAKGLRPARVLFKHALRNALIPVVA-LAAVEFGFMLGGSVV 247

Query: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           IE +FSL+GIG L ++A  + D+P+V + + ++ ++ ++L++++D+    +DPRI
Sbjct: 248 IETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIYIILTLLADVLNALLDPRI 302