Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  150 bits (379), Expect = 5e-41
 Identities = 102/374 (27%), Positives = 174/374 (46%), Gaps = 61/374 (16%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M S+I RR+ L++PT + I  + F +I++ PG PVE  +                     
Sbjct: 1   MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMM--------------------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G R +DP++  +   R G +KP++ +Y   +   A  + GESL     
Sbjct: 40  ------------GERRVDPEMHAQAMERLGLNKPLYAQYIDYIGKLAQGDLGESLRTRTS 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V        P ++ L L + +   ++ +  G+  A+  GS FD     + + GY++P F 
Sbjct: 88  VWSEFTSLFPATLELSLAALIFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRG-------------------LVSDNFASLPWYQQVLDYF 221
           + +ILI+ F+      W P+ G                   L+SD   S       LD  
Sbjct: 148 WGLILIMFFSV--TLGWTPVSGRIDLLYDIPPVTGFMLIDTLLSDEQGSF------LDAL 199

Query: 222 WHLTLPTLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLI 281
            H+ LP + +     A ++ +T++S L+ + + YV TARAKGL   R+++ H  RNA++ 
Sbjct: 200 HHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAKGLSPARVVFVHGLRNALIP 259

Query: 282 IIAGFPSAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLS 341
           ++  F    I     G++L E +FS  GIG    EA   RDYP+V + + ++  L +L++
Sbjct: 260 VLTVF-GLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVN 318

Query: 342 IISDLTYMWVDPRI 355
            + D+ Y + +PRI
Sbjct: 319 FVVDILYGFANPRI 332