Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  452 bits (1163), Expect = e-132
 Identities = 220/361 (60%), Positives = 283/361 (78%), Gaps = 9/361 (2%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEG-NTSGVMERFTGGGQE 59
           ML+Y++RRLLL++PTL AI+ +NF I+Q APGGPVEQAIA+++G + +GV     GGG E
Sbjct: 1   MLAYVIRRLLLIIPTLLAILIVNFLIVQAAPGGPVEQAIARIQGFSPNGV----GGGGGE 56

Query: 60  VAAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGG 119
           VAA   A     + +RGLDP ++E+I + +GFDKP+HER + MLK+YA  +FG S FRG 
Sbjct: 57  VAASGTAS----RSTRGLDPALIEQIKQHYGFDKPMHERLWLMLKNYAQLDFGTSFFRGA 112

Query: 120 DVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGF 179
            V +LI ++LPVS+SLGLW+TL+ YLISIPLGI KA+ HGS FDVWSS +VIIGYA P F
Sbjct: 113 PVTELIAQKLPVSLSLGLWATLITYLISIPLGIRKAVRHGSAFDVWSSTLVIIGYATPAF 172

Query: 180 LFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATL 239
           LFAI+LI++FA G+Y SWFP +GL SDNF SL  + +V DY WHL LP  ++VIGGFATL
Sbjct: 173 LFAILLIVVFAGGSYLSWFPAQGLFSDNFDSLSTWGKVKDYLWHLVLPVSSLVIGGFATL 232

Query: 240 SMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSM 299
           ++LTKNSFL+EI++QYVVTARAKGL E R+LY HVFRNAML++IAG P A I +FF GS+
Sbjct: 233 TILTKNSFLNEISRQYVVTARAKGLTEHRVLYGHVFRNAMLLVIAGIPQALIEVFFAGSL 292

Query: 300 LIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFEA 359
           LIE +F L+G+G + +EA + RDYP+VF +L++ TL GLL+ +I DL Y  VD RIDF A
Sbjct: 293 LIETIFGLDGLGRMSYEAAVSRDYPIVFGTLFLFTLFGLLIKLIGDLCYTLVDARIDFSA 352

Query: 360 R 360
           R
Sbjct: 353 R 353