Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  149 bits (375), Expect = 1e-40
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 49/368 (13%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M  ++L RL +++PT   +  I F  I++ PG PV                         
Sbjct: 1   MFRFLLGRLAVLIPTFIGVSIIAFSFIRLLPGDPVALL---------------------- 38

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G R + P+   EI+ + GFD+PI  +Y   L      +FG S+     
Sbjct: 39  -----------SGERVMSPERHAEISHQLGFDRPIVMQYLDYLWGVLQGDFGTSIVTKKP 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           VID  +E  P ++ L L + +   ++ IP G+  A+  GS FD       +IG+++P F 
Sbjct: 88  VIDQFMELFPATVELSLCAIIFAVVVGIPAGVVAAVKRGSIFDQIIMGTALIGFSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRGLVS--DNFASLPWYQQV-----------LDYFWHLTLP 227
           + ++LII+ +      W P+ G +S    F S+  +  V              F HL LP
Sbjct: 148 WGLLLIIVVS--GILQWTPVSGRISLMFFFPSVTGFMLVDSLLSGQEGAFQSAFNHLILP 205

Query: 228 TLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFP 287
           T+ +     A ++  T+++ L+ +++ YV TARAKGL   R++  H  RNAM+ ++    
Sbjct: 206 TIVLGTIPLAVIARQTRSAMLEVLSEDYVRTARAKGLSTFRVVGIHALRNAMIPVVTTI- 264

Query: 288 SAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLT 347
              I +   G++L E +FS  GIG    ++  +RDY ++   L I+  + +L+++  DL 
Sbjct: 265 GLQIGVMLAGAILTETIFSWPGIGKWMVDSVFRRDYAVIQGGLLIIAAVIMLVNLAVDLL 324

Query: 348 YMWVDPRI 355
           Y  ++PRI
Sbjct: 325 YGLINPRI 332