Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  469 bits (1208), Expect = e-137
 Identities = 221/365 (60%), Positives = 293/365 (80%), Gaps = 5/365 (1%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M++YILRRL L+  TL+ II +NF I+QIAPGGPVEQ +++L+G   G   RF+G G   
Sbjct: 1   MIAYILRRLALIPLTLFGIILVNFLIVQIAPGGPVEQVLSRLQGMDGGATARFSGSGGGE 60

Query: 61  AAPTDA-----PVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESL 115
           A    A     P + Y+G+RGLDP  V+ +  +FGFD+P HER+ +M+ DY TF+ G+S 
Sbjct: 61  AGGGSATSALGPTTAYRGARGLDPAYVKSLEVQFGFDRPAHERFLKMVGDYLTFDLGQSY 120

Query: 116 FRGGDVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYA 175
           +R   VIDLI+E++PVS+SLG+WST++IYL+SIPLGI+KA+  GSRFD+ +S +V++GYA
Sbjct: 121 YRSIPVIDLILEKMPVSLSLGIWSTMIIYLVSIPLGIAKAVRDGSRFDMATSWMVVVGYA 180

Query: 176 IPGFLFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGG 235
           +P FLFAI+LII+FA G YF WFPLRG++SDN+  L W Q  LDY WH+ LP  A+VIGG
Sbjct: 181 VPSFLFAILLIIVFAGGRYFDWFPLRGILSDNWRELSWPQLALDYLWHMVLPVTALVIGG 240

Query: 236 FATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFF 295
           FA+L+MLTKNSFL+EI KQYV+TARAKGL E +ILY+HVFRNAML+++AGFP+A +S+ F
Sbjct: 241 FASLTMLTKNSFLEEIRKQYVITARAKGLTESKILYRHVFRNAMLLVVAGFPAALVSMLF 300

Query: 296 TGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           TGS+LIEV+FSL+G+GLLGFE+T+ RDYP++F +LYI  L+GLLLS+ISD TY  +DPRI
Sbjct: 301 TGSVLIEVIFSLDGLGLLGFESTMNRDYPVMFGTLYIFGLIGLLLSLISDATYHIIDPRI 360

Query: 356 DFEAR 360
           DFE+R
Sbjct: 361 DFESR 365