Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  149 bits (375), Expect = 1e-40
 Identities = 104/352 (29%), Positives = 172/352 (48%), Gaps = 36/352 (10%)

Query: 4   YILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAP 63
           + LRRL   +P+L  I+   F ++Q+APG  V+  +AQ+            GGG      
Sbjct: 6   FALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQM------------GGG------ 47

Query: 64  TDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVID 123
                         D Q++E +   +G D P+  +  + L     F+ G S   G  VID
Sbjct: 48  --------------DAQIIETLRHFYGLDAPVAVQLGRYLLRLVQFDLGYSAIYGKPVID 93

Query: 124 LIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAI 183
           +IVERLPV++ L   S ++     + LG+  A       D   S + ++ YA P F   +
Sbjct: 94  VIVERLPVTLLLMGASLVVAVSGGVALGVLAARRVNKWPDTLISTLGLVFYATPSFWLGL 153

Query: 184 ILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLSMLT 243
           + +++FA      W P  G   +  A      + LD   H+ LPT+ + +   AT   + 
Sbjct: 154 MAVVVFAV--KLGWLPPGGF-EEVGAGYQGLTRALDIARHMALPTITLSLIFLATYLRIM 210

Query: 244 KNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSMLIEV 303
           + S L+  +  +V TARAKG+DE +I+  HV RNA+L ++        S    GS+++E 
Sbjct: 211 RASMLEVSSLDFVRTARAKGVDETKIVTHHVLRNALLPMLT-LIGLNASTMLGGSVVVES 269

Query: 304 MFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           +F+L G+G L +E+ +QRD   +   + +  +L ++++ I DL Y  +DPRI
Sbjct: 270 VFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVIVVNFIVDLLYARLDPRI 321