Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  141 bits (356), Expect = 2e-38
 Identities = 95/354 (26%), Positives = 173/354 (48%), Gaps = 44/354 (12%)

Query: 4   YILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAP 63
           ++LRR+L  +P L  +  I F ++++APG P    +              TG  +++A  
Sbjct: 4   FLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGA------------TGTAEDIAR- 50

Query: 64  TDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVID 123
                   +   GLD  +  +  R  G          QML+     + GES F    V+ 
Sbjct: 51  -------VRADLGLDDPMPVQFVRWAG----------QMLQG----DLGESFFMKQTVVA 89

Query: 124 LIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAI 183
           LI +R+  ++SL   + ++  LI++PLG+  A  HG   D       ++G++IP F+   
Sbjct: 90  LIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAWRHGGWLDRALMGFSVLGFSIPAFVIGY 149

Query: 184 ILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLSMLT 243
            LI LFA   ++   P++G V        W +       HL +P + + I   A ++ +T
Sbjct: 150 CLIWLFAM--HWQMLPVQGYVRFGDDPSRWLR-------HLIMPAVTLSIIYVALIARVT 200

Query: 244 KNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSMLIEV 303
           + +  + + + Y+ TARAKG+ E R+L +H   NA + I+       +++   G ++ E 
Sbjct: 201 RAAVAEAMTEDYIRTARAKGISEVRVLMRHALANAAVPIVTVI-GIGVAMLIGGVVVTEA 259

Query: 304 MFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDF 357
           +F++ G+G L  +A + RD+PL+       ++L +L+++  DL+Y+  DPRI +
Sbjct: 260 VFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYMLINLAVDLSYLLFDPRIRY 313