Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  158 bits (399), Expect = 2e-43
 Identities = 105/356 (29%), Positives = 171/356 (48%), Gaps = 53/356 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +IL+RL++ VPTL  IIT+ FF+++IAPGGP                          
Sbjct: 1   MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGP-------------------------- 34

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESL-FRGG 119
                     +   R L P++ + I   +  DKP+ ++Y   L      +FG S   R  
Sbjct: 35  ----------FDSERALPPEIEKNILAAYNLDKPLIDQYALYLGGILHGDFGPSFKIRDF 84

Query: 120 DVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGF 179
            V +LI+   P SI LGL + +L   + + LG   A+H     D     V ++G  IP F
Sbjct: 85  SVSELILAGAPASIQLGLAALILALSVGVTLGTLAALHQNEAGDFAVMGVAMVGIVIPNF 144

Query: 180 LFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATL 239
           + A +L ++   G Y+   P  G          W    L Y     LP  A+ +   A +
Sbjct: 145 VMAPLLSLVL--GVYWGILPTSG----------WGDGALRY---KILPIFALALPQIAYI 189

Query: 240 SMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSM 299
           + LT+ S ++ +   +V TARAKGL ER ++ +H  +  +L +++    A  ++  TGS+
Sbjct: 190 ARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAAAAVT-TGSV 248

Query: 300 LIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           ++E +F++ GIG     A + RDYP+V   + +   L +LL++  DL Y  +DP++
Sbjct: 249 VVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLIDPKL 304