Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  181 bits (459), Expect = 3e-50
 Identities = 109/352 (30%), Positives = 187/352 (53%), Gaps = 36/352 (10%)

Query: 5   ILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAPT 64
           +LR+L  +V     I  I F++I +APG P +                           T
Sbjct: 16  MLRKLAWMVVVFLGITVICFWVIHLAPGSPTD------------------------LETT 51

Query: 65  DAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGG-DVID 123
             P++G +  + L+          +G D+P++ +Y Q L      +FG S+   G  V++
Sbjct: 52  MNPLAGAEARKRLESI--------YGLDQPLYVQYAQWLGRLVRLDFGNSMSSDGRPVME 103

Query: 124 LIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAI 183
            I ERLP+++ + + +  L  L+++P+G++ A   G  FD   + +V IG+A+PGF  A+
Sbjct: 104 RIRERLPLTVGMNVAALFLTLLLAVPIGVASAHWQGGWFDRGMTVLVFIGFAMPGFWLAL 163

Query: 184 ILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLSMLT 243
           +L++ F  G +  W PL GL S ++A+L  + + LD   HL LP      G  A +S   
Sbjct: 164 LLMLFF--GIHLGWLPLSGLTSLDYATLSPWGKFLDVARHLALPLFIYTFGSLAGMSRFM 221

Query: 244 KNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSMLIEV 303
           +++ L+ + + Y++TARAKGL  R ++++H  RNA+L +I     +   +   GS++IE 
Sbjct: 222 RSAMLEVLRQDYILTARAKGLPTRTVIFRHALRNALLPVITILGLSLPGL-IGGSVIIES 280

Query: 304 MFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           +F+L G+G L + A + RDYPL+  +L +  +L    ++I+DL Y   DPRI
Sbjct: 281 IFALPGLGQLFYTAVMARDYPLIMGNLVLGAVLTQAGNLIADLCYGLADPRI 332