Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  436 bits (1121), Expect = e-127
 Identities = 210/358 (58%), Positives = 274/358 (76%), Gaps = 1/358 (0%)

Query: 4   YILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERF-TGGGQEVAA 62
           Y+LRRLLLV+PTL  I+TINFF++Q+APGGPVEQ IA+LEG+ +  MER   G G ++  
Sbjct: 14  YMLRRLLLVLPTLLGIVTINFFVVQLAPGGPVEQYIARLEGDGAAYMERIGAGDGGDMQP 73

Query: 63  PTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVI 122
             D   + YKG+ GL PQ VE I R++GFD+PI ERY  ML D+A F FG+SLF+G  VI
Sbjct: 74  AADDGTAAYKGAAGLSPQAVEAIRRQYGFDRPILERYVTMLGDFALFRFGDSLFKGRSVI 133

Query: 123 DLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFA 182
           DL+ + +PVS+SLGLWSTL+IY +SIPLG+++A+  GSRFD  S   VI  +AIP FL A
Sbjct: 134 DLVGDAMPVSLSLGLWSTLVIYAVSIPLGMARALRRGSRFDTMSGIAVIAAHAIPAFLLA 193

Query: 183 IILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLSML 242
           ++LI+LFA G+Y  WFPLRGLVS    +LP+  +VLDY  H+ LP  AMV+GGFA L+ L
Sbjct: 194 VLLIVLFAGGSYLQWFPLRGLVSPGHDALPFGARVLDYAHHMVLPVTAMVVGGFAGLTSL 253

Query: 243 TKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSMLIE 302
           T+N+FLDE+ K YV TA AKGL  + +L++HVFRNAML++I+G P AF+ +FFTGS+LIE
Sbjct: 254 TRNAFLDELGKAYVETALAKGLTRKAVLWRHVFRNAMLLVISGLPGAFVRVFFTGSLLIE 313

Query: 303 VMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFEAR 360
            +FSL G+GL+GFEA +QRDYP++F+SLY+ TL+GL  S+  D+  M VDPRIDFE R
Sbjct: 314 TIFSLNGLGLMGFEAAMQRDYPVMFASLYVFTLIGLTASLAGDMLCMAVDPRIDFERR 371