Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  451 bits (1161), Expect = e-131
 Identities = 210/334 (62%), Positives = 273/334 (81%), Gaps = 1/334 (0%)

Query: 13  NPLTEARWARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYS 72
           +PL   R+ RFK NRRG+WSLW+F+ LF+++L  ELIANDKPL++ Y G+ Y P+ +R++
Sbjct: 5   SPLGRRRFERFKKNRRGWWSLWLFIGLFILTLGGELIANDKPLVVSYQGSLYFPVFKRHT 64

Query: 73  ETQFGGEFDTEADYTDPYVVSLIEEKGQIIW-PLIRFHYDTINFDITGSVPSAPDSVNWL 131
           E +FGG+   +ADY   YV +LI + G  +W P I F  DT N+D+    PS P +VNWL
Sbjct: 65  EQEFGGQLPFQADYRSSYVQNLIHKDGGWLWFPPIPFSDDTPNYDLNQPAPSPPSTVNWL 124

Query: 132 GTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVW 191
           GTDD+ RDVLAR+I+G R+S+LF   LT IS+LIG+  GA QGYYGGW+DL GQR +EVW
Sbjct: 125 GTDDQSRDVLARVIFGARVSILFALALTAISTLIGIAAGALQGYYGGWVDLLGQRLLEVW 184

Query: 192 SGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGV 251
           SG+P L+LLIILS FVEPNFWWLLGIM LFSW++LV VVRAEFLR RN +YV+AA+A+G+
Sbjct: 185 SGLPVLYLLIILSGFVEPNFWWLLGIMALFSWLALVDVVRAEFLRGRNLEYVKAARALGL 244

Query: 252 SDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKAN 311
           SD ++I+RH+LPNAM A+L+ +PFIL+G+++TLT+LDFLGFG+PAGS SLGEL+AQGK N
Sbjct: 245 SDRKVIMRHILPNAMNATLSYLPFILTGAISTLTALDFLGFGMPAGSASLGELIAQGKQN 304

Query: 312 LQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           LQAPWLG++AF  L+++L+LLVFIGEA+RDAFDP
Sbjct: 305 LQAPWLGLTAFFTLALILSLLVFIGEALRDAFDP 338