Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  468 bits (1205), Expect = e-137
 Identities = 219/334 (65%), Positives = 278/334 (83%), Gaps = 1/334 (0%)

Query: 13  NPLTEARWARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYS 72
           +PL   R+  FKAN+RG+WSLW+FL+LF  SL AELIANDKPL++ YD AWY P ++RY 
Sbjct: 4   SPLNRRRFELFKANKRGWWSLWLFLILFGASLGAELIANDKPLVVHYDNAWYFPALKRYP 63

Query: 73  ETQFGGEFDTEADYTDPYVVSLIEEKGQ-IIWPLIRFHYDTINFDITGSVPSAPDSVNWL 131
           ET FGGEF  EA+Y  PY+  L++ K   ++W  I + Y +IN+D+    P+ P + N L
Sbjct: 64  ETAFGGEFPLEANYKSPYIRELLKAKDAWVLWAPIPYSYQSINYDLKVPAPAPPSADNLL 123

Query: 132 GTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVW 191
           GTDD+GRDVLAR+IYGFRISVLF   LT++SS+IGV+ GA QG+YGGW+DL GQRF+E+W
Sbjct: 124 GTDDQGRDVLARVIYGFRISVLFALTLTILSSIIGVIAGALQGFYGGWVDLAGQRFLEIW 183

Query: 192 SGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGV 251
           SG+P L+LLIIL+SFV+PNFWWLLGIM+LFSWMSLV VVRAEFLR RN +YVRAA+A+G+
Sbjct: 184 SGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGM 243

Query: 252 SDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKAN 311
            +  I+ RH+LPNAMV+++T MPFIL+G++ TLT+LDFLGFGLP G+PSLGEL+AQGK+N
Sbjct: 244 QNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLPPGAPSLGELVAQGKSN 303

Query: 312 LQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           LQAPWLG+SAF VL++ML+LLVFIGE+ RDAFDP
Sbjct: 304 LQAPWLGMSAFAVLALMLSLLVFIGESARDAFDP 337