Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  140 bits (352), Expect = 5e-38
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 1/227 (0%)

Query: 120 SVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGW 179
           +V  AP  + W+GTD+ GRD+ +R++YG R S+L G +   I+  IGV +G   GY+GG 
Sbjct: 62  AVRKAPSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGK 121

Query: 180 LDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRN 239
           LD+   + +E     P L L I L +F+ P+    +  + L +      + R + L  ++
Sbjct: 122 LDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKH 181

Query: 240 FDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSP 299
            DY+  A+A+G+ D  IILR++LPN M   +      ++ ++    SL FLG G    SP
Sbjct: 182 EDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSP 241

Query: 300 SLGELLAQGKANL-QAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           S G +L   K  + QAPW+ I+  V + + +     +G+ +RDA DP
Sbjct: 242 SWGSMLNTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDP 288