Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like from Synechococcus elongatus PCC 7942

 Score =  141 bits (356), Expect = 2e-38
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 50/350 (14%)

Query: 31  WSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMP--IVQRYSETQFGG---------- 78
           W + + LLL++ +L A+ +A   P   Q D A   P  I  R  + Q+ G          
Sbjct: 15  WGVGLLLLLYLGALGADCLAPYNPYSSQADAALLPPSQIFWRNRQGQWLGPHVYPVRQGP 74

Query: 79  --------EFDTEADYTDPYVVSLIEEKGQII-WPLIRFHYDTINFDITGSVPSAPDSVN 129
                   E  T+ +   P  + ++ +  +++ W   R    T          + P  ++
Sbjct: 75  IDLETGQREVITDWNAPSPLRIWVVGDPYRVLSWKGDRHLLGT----------TGPGKLH 124

Query: 130 WLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIE 189
            LGTDD+GRD  +R++YG RIS+  G +  +++  +G+L+G   GY+GGW+D    R +E
Sbjct: 125 LLGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALIMRLVE 184

Query: 190 VWSGMPTLFLLIILSSFVEP------NFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYV 243
           V   +P+L+LL+ L++ + P       F  ++ I  L +W  L  V+R + L  R  +YV
Sbjct: 185 VLMTIPSLYLLVALAAVLPPGLSSAERFLLIVAITSLINWAGLARVIRGQVLSLREREYV 244

Query: 244 RAAQAMGVSDMRIILRHMLPNAM-----VASLTMMPFILSGSVTTLTSLDFLGFGLPAGS 298
           +A+Q MG S + +++RH+LP  +      A+L +  FI++ SV     L  +G G+    
Sbjct: 245 QASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPSFIVAESV-----LSLVGLGIQQPD 299

Query: 299 PSLGELLA---QGKANLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           PS G +L+        L  PWL     +++ V +     +G+ +RD  DP
Sbjct: 300 PSWGNMLSLATNASMLLLNPWLIWPPALLIVVAVLAFNVVGDGLRDRLDP 349