Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter for D-Raffinose, permease component 1 (from data) from Sinorhizobium meliloti 1021

 Score =  131 bits (330), Expect = 2e-35
 Identities = 108/357 (30%), Positives = 164/357 (45%), Gaps = 40/357 (11%)

Query: 20  WARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYSETQF--- 76
           W R K +  G   L +  LL ++++FAE ++   P       A    I  R  E  F   
Sbjct: 29  WRRLKRSWTGLLGLVLVCLLILMAVFAEFLSPVDPKATDVAFAQPQTISFRDKEGNFVFP 88

Query: 77  --------GGEFDTEA-------DYTDPYVVSLIEEKGQIIWPLIRFHYDTINFDITGSV 121
                     E D          DY +P V+    +      P   F        + G+V
Sbjct: 89  PRSYPVRETEELDPVTFQPIIGPDYDNPQVLGFFVKGA----PYRLFGLIPAERHLFGAV 144

Query: 122 PSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLD 181
              P  V+ LGTD  GRDVL+RI+YG RIS++    +  I +++G  +G   GY+GG  D
Sbjct: 145 DGTP--VHLLGTDKFGRDVLSRILYGSRISLMIALTVVFIVTVVGTTVGMVSGYFGGRFD 202

Query: 182 LFGQRFIEVWSGMPTLFLLIILSSFV---EPNFWWLLGIMVLFS---WMSLVGVVRAEFL 235
            + QRF+E+    P L L + L+S +    P   +L  ++++ S   W  +   VR + L
Sbjct: 203 AWVQRFVELVLAFPQLPLYLALASLIPVTAPTNVFLAFVIIVMSALGWAQMSREVRGKTL 262

Query: 236 RCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLP 295
                +YVRAA A+G +D RII +H+ PN M   +  +   +   V   + L FLGF + 
Sbjct: 263 ALARIEYVRAAIAIGATDRRIIFQHIFPNVMSHVIVAVTLAIPHVVLLESFLGFLGFAVK 322

Query: 296 AGSPSLGELLAQGKANLQA----PWLGISAFVVLSVMLTLLVF--IGEAVRDAFDPH 346
               S G L+ Q  AN  A    PW+      V  V++T+  F  +G+ +RDA DP+
Sbjct: 323 PPLISWG-LMLQDTANYSAIGSYPWI---LSPVAFVLVTVFAFNALGDGLRDAIDPY 375