Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  149 bits (376), Expect = 9e-41
 Identities = 83/249 (33%), Positives = 137/249 (55%), Gaps = 7/249 (2%)

Query: 101 IIWPLIRFH-YDTINFDITGSVPSAPDSVN--WLGTDDKGRDVLARIIYGFRISVLFGFI 157
           ++ PL+  H YD I ++   ++   PD  N  W GTD  GRD+  R +YG R+S+  G I
Sbjct: 54  VVGPLLSPHPYDEIYWE---AIQMPPDFANGFWFGTDGNGRDLFVRTLYGARVSLAVGVI 110

Query: 158 LTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGI 217
            T +S +IGV+ GA  GY+GG +D+   RF++V   +P +F +I+L      N + +   
Sbjct: 111 ATTVSLVIGVVYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVFGRNIFLIFVA 170

Query: 218 MVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFIL 277
           +    W+++  +VR + +     +++ AA A+GVSD  II RH++PN +   +      +
Sbjct: 171 LGAVEWLTMARIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTI 230

Query: 278 SGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKANLQ-APWLGISAFVVLSVMLTLLVFIG 336
              V T + L FLG G+     S G L+++G   L+ +PW+ +     L++ L    FIG
Sbjct: 231 PQVVLTESFLSFLGLGVQEPLTSWGVLISEGARVLEVSPWMLLFPAFFLALTLLCFNFIG 290

Query: 337 EAVRDAFDP 345
           + +RDA DP
Sbjct: 291 DGLRDALDP 299