Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  131 bits (329), Expect = 3e-35
 Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 6/243 (2%)

Query: 110 YDTINFDITGSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLI 169
           Y     DI G   +AP +   LGTD  GRDVLA +IYG R ++  G +  +I+ +IGV +
Sbjct: 62  YPVDPLDIVGLPFAAPAADAPLGTDYLGRDVLAGLIYGGRATLTVGAVAALITIVIGVTV 121

Query: 170 GATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGV 229
           GA  G++GGW+D    +  E +  +P L   ++L +   P    +   +   SW S   +
Sbjct: 122 GALAGFFGGWVDALLVKIAEFFQVLPPLLFAMVLVTLFGPKLSTITLAIGAVSWTSAARL 181

Query: 230 VRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDF 289
            RAEF+R R+ D+++A++A G   + +ILR +LPNA+   +      +  ++     L F
Sbjct: 182 TRAEFMRLRDLDFIKASRAAGAGSLHLILRVVLPNALPPIIVSATLAIGTAILFEGGLSF 241

Query: 290 LGFGLPAGSPSLGELLAQGKANLQAPWLGIS---AFVVLSVMLTLLVFIGEAVRDAFDPH 346
           LG G P  + S G ++ Q +  +   W  ++   A + L+V+   LV  G+ V DA +P 
Sbjct: 242 LGLGDP-NTMSWGLMIGQNRNYVLDAWWAVTFPGAAIFLAVLAVSLV--GDGVNDAVNPR 298

Query: 347 LQR 349
           L+R
Sbjct: 299 LRR 301