Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., putative D,D-dipeptide transport system permease protein from Phaeobacter inhibens DSM 17395

 Score =  139 bits (350), Expect = 9e-38
 Identities = 68/222 (30%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 125 PDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFG 184
           P   NW+GTD+ GRD+ +R++YG RI+++   ++ VIS+ +G++IGA  GY+GGW+D   
Sbjct: 73  PSWANWMGTDELGRDIFSRVVYGARITLMIVALVAVISAPLGLIIGAIAGYFGGWVDRIL 132

Query: 185 QRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVR 244
               +V+  MP L L +   + + P     +  + + +W +   + RAE L  RN +++ 
Sbjct: 133 MGITDVFLSMPKLILALAFVAALGPGIENAIIAIAITAWPAYARIARAETLTFRNAEFIA 192

Query: 245 AAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGEL 304
           A + +G S  R+IL+H+LP    + +  +   ++G + T   L FLG G     P  G +
Sbjct: 193 ATRLLGASHSRVILQHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAM 252

Query: 305 LAQGKA-NLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           +++G+   L   W+     + + V+     F+G+ +RD  DP
Sbjct: 253 ISRGRVFILDQWWVATMPGIAIIVVSLGFCFLGDGLRDVLDP 294