Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., Probable oligopeptide-transport integral membrane protein ABC transporter OppC from Mycobacterium tuberculosis H37Rv

 Score =  138 bits (347), Expect = 2e-37
 Identities = 84/247 (34%), Positives = 141/247 (57%), Gaps = 10/247 (4%)

Query: 104 PLIRFHYDTINFDITGSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISS 163
           PL+ + YD ++F+   ++   P + +WLGT+  G+D+LA+ + G + S+L G  + VIS+
Sbjct: 40  PLLPYSYDDLDFN---ALLQPPGTKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVIST 96

Query: 164 LIGVLIGATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVE--PNFWWLLGIMVLF 221
            I   +GA  GY+GGW D      +++   +P+  L+ I++   +   N  +L+ ++  F
Sbjct: 97  GIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGF 156

Query: 222 SWMSLVGVVRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSV 281
            WM    +VR   +  R  +++RAA+ MGVS  RII+ H++PN  VAS+ ++   L+ + 
Sbjct: 157 GWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPN--VASILIIDAALNVAA 214

Query: 282 TTL--TSLDFLGFGLPAGSPSLGELLAQGKANLQA-PWLGISAFVVLSVMLTLLVFIGEA 338
             L  T L FLGFG+     SLG L+A G A+  A PW+ +    +L ++L      G+ 
Sbjct: 215 AILAETGLSFLGFGIQPPDVSLGTLIADGTASATAFPWVFLFPASILVLILVCANLTGDG 274

Query: 339 VRDAFDP 345
           +RDA DP
Sbjct: 275 LRDALDP 281