Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  131 bits (330), Expect = 2e-35
 Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 16/264 (6%)

Query: 101 IIWPLIRFHYDTINFDITGSVPSAPDSVN----WLGTDDKGRDVLARIIYGFRISVLFGF 156
           +I P   F+  ++N     S P  P++      WLGTDD+GRDV + I+YG RIS+  GF
Sbjct: 59  LIAPYDPFNPASLNLMNGFSAPMTPNAFTGDTFWLGTDDQGRDVFSTILYGMRISLFVGF 118

Query: 157 ILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFV--------- 207
              + +  +GV +G   GY GGW++    R  +V    P + + +++             
Sbjct: 119 AAVLFAMTLGVTLGLIAGYVGGWVETIIMRVADVQLTFPAILVAMLIFGIAKGITPVEYR 178

Query: 208 -EPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAM 266
            +   W L+  + L  W+    VVR   L  +N +YV+AA+ +G     I+LRH+LPN +
Sbjct: 179 DQMAIWVLILAIGLSDWVQFARVVRGATLVEKNKEYVQAARLIGRGSGAIMLRHILPNVL 238

Query: 267 VASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKANLQAP--WLGISAFVV 324
              L +    L+ ++    +L FLG G P   PSLG L+  G+  L +   W+     V 
Sbjct: 239 SPVLVIATISLALAIIAEATLSFLGVGAPPTQPSLGTLIRIGQGFLFSGEWWILFFPAVT 298

Query: 325 LSVMLTLLVFIGEAVRDAFDPHLQ 348
           L V+   +  +G+ +RDA +P L+
Sbjct: 299 LLVLALSVNLLGDWLRDALNPRLR 322