Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  582 bits (1501), Expect = e-171
 Identities = 303/525 (57%), Positives = 398/525 (75%), Gaps = 7/525 (1%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           M+D +++I +LSV F      + V   + L I  GE LALVGESGSGKSVTA++IL+LLP
Sbjct: 7   MSDNLIEIRDLSVAFN----DQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLP 62

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
           +  AH  SGSI +   + +    +ALR +RG RI MIFQEPM SLNPLH + KQ+ ETL 
Sbjct: 63  ENEAH-TSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLM 121

Query: 121 IHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIA 180
           +H+GL   AA Q+ +E L  VGI++P  ++ AYPH+LSGG+RQRV+IAMAL  EPELLIA
Sbjct: 122 LHKGLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIA 181

Query: 181 DEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNA 240
           DEPTTALDV+VQ +IL LLKSLQQ LGM++L I+HDL++VR IA RV VM++G++VE   
Sbjct: 182 DEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAP 241

Query: 241 CHTLFAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIK 300
           C TLF+AP HPY+ +L++A+P G  +P   D   +LQ + LRV FP+ GG FRR + Y++
Sbjct: 242 CETLFSAPKHPYSCELLHAEPEGEALPRD-DREEVLQVQDLRVSFPLSGGLFRRKE-YLR 299

Query: 301 AVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGAIRFAGQDLQALKRREMLPY 360
           AV  +S ++ +G++LG+VGESGSGKST G AIL+L+ S+G+IRF GQ L  L ++ + P+
Sbjct: 300 AVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLIESEGSIRFQGQALDHLSQKALRPW 359

Query: 361 RSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHR 420
           R +MQVVFQDP+ +L+PRMSV Q+I EGL VH   + ++ +  +   ++EVGLD  TRHR
Sbjct: 360 RKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVIQALKEVGLDPATRHR 419

Query: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480
           YP+EFSGGQRQRIAIARALVLKP  ILLDEPTS+LDRTVQ QV+ LL+ LQQKY LTYLF
Sbjct: 420 YPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLF 479

Query: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           ISHDLAV+RAL H  IV+K G++VE G +  +F++P HPYT++L+
Sbjct: 480 ISHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELL 524



 Score =  183 bits (464), Expect = 2e-50
 Identities = 106/261 (40%), Positives = 164/261 (62%), Gaps = 15/261 (5%)

Query: 5   VLKIDNLSVGFGIAG------QARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRL 58
           VL++ +L V F ++G      +     +G+SL+I RG+TL +VGESGSGKS    AILRL
Sbjct: 275 VLQVQDLRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRL 334

Query: 59  LPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVET 118
           +         GSI F        S++ALR  R  ++ ++FQ+P  SL+P   + + + E 
Sbjct: 335 IES------EGSIRFQGQALDHLSQKALRPWRK-QMQVVFQDPFGSLSPRMSVQQIISEG 387

Query: 119 LAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELL 178
           L +H+       E + I+ L +VG+  P  + + YPHE SGG+RQR+ IA AL+ +P L+
Sbjct: 388 LEVHQPSSPEQCEARVIQALKEVGL-DPATR-HRYPHEFSGGQRQRIAIARALVLKPALI 445

Query: 179 IADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVET 238
           + DEPT+ALD +VQ Q++ LL+ LQQ+  +  LFI+HDL++VR +A  + V++ G++VE 
Sbjct: 446 LLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQ 505

Query: 239 NACHTLFAAPAHPYTQQLINA 259
            A H +F +P HPYT++L+ A
Sbjct: 506 GASHDVFDSPQHPYTKELLAA 526