Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., microcin ABC transporter ATP-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  568 bits (1464), Expect = e-166
 Identities = 298/525 (56%), Positives = 391/525 (74%), Gaps = 7/525 (1%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           M+D +++I +LSV F      + V   + L I  GE LALVGESGSGKSVTA++IL+LLP
Sbjct: 1   MSDNLIEIRDLSVAFN----DQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLP 56

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
           +      +GSI +   + L    + LR +RG RI MIFQEPM SLNPLH + KQ+ ETL 
Sbjct: 57  ETGTR-TTGSIRYRGQELLGAEAKTLRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLM 115

Query: 121 IHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIA 180
           +HRG    AA Q+ +E L  VGI+ P  ++ AYPH+LSGG+RQRVMIAMAL  EPELLIA
Sbjct: 116 LHRGQGGKAARQRILELLALVGIQKPAERLKAYPHQLSGGQRQRVMIAMALACEPELLIA 175

Query: 181 DEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNA 240
           DEPTTALDV+VQ +IL LLKSLQQ LGM++L I+HDL++VR IA RV VM++G++VE   
Sbjct: 176 DEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAP 235

Query: 241 CHTLFAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIK 300
           C TLF+AP HPY+ +L++A+P G  +P   +   +LQ   LRV F + GG FRR + Y++
Sbjct: 236 CETLFSAPKHPYSCELLHAEPEGEALPRD-EREDVLQVRDLRVSFALGGGLFRRKE-YLR 293

Query: 301 AVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGAIRFAGQDLQALKRREMLPY 360
           AV  +S ++ +G++LG+VGESGSGKST G AIL+L+ S+G+I F GQ L+ L  + + P+
Sbjct: 294 AVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLIESEGSIHFQGQALEQLSHKALRPW 353

Query: 361 RSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHR 420
           R KMQVVFQDP+ +L+PRMSV Q+I EGL VHS  + +E +  +   ++EVGLD  +RHR
Sbjct: 354 RRKMQVVFQDPFGSLSPRMSVQQIISEGLEVHSPSSPEECEAQVIQALKEVGLDPQSRHR 413

Query: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480
           YP+EFSGGQRQRIAIARALVLKP  ILLDEPTS+LDRTVQ QV+ LL+ LQ+K+ LTYLF
Sbjct: 414 YPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQEKHGLTYLF 473

Query: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           ISHDLAV+RAL H  IV+K G++VE G +  +F++P HPYT++L+
Sbjct: 474 ISHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPRHPYTKELL 518



 Score =  186 bits (473), Expect = 1e-51
 Identities = 107/261 (40%), Positives = 165/261 (63%), Gaps = 15/261 (5%)

Query: 5   VLKIDNLSVGFGIAG------QARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRL 58
           VL++ +L V F + G      +     +G+SL+I RG+TL +VGESGSGKS    AILRL
Sbjct: 269 VLQVRDLRVSFALGGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRL 328

Query: 59  LPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVET 118
           +         GSIHF      + S +ALR  R  ++ ++FQ+P  SL+P   + + + E 
Sbjct: 329 IES------EGSIHFQGQALEQLSHKALRPWRR-KMQVVFQDPFGSLSPRMSVQQIISEG 381

Query: 119 LAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELL 178
           L +H        E + I+ L +VG+  P+ + + YPHE SGG+RQR+ IA AL+ +P L+
Sbjct: 382 LEVHSPSSPEECEAQVIQALKEVGL-DPQSR-HRYPHEFSGGQRQRIAIARALVLKPALI 439

Query: 179 IADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVET 238
           + DEPT+ALD +VQ Q++ LL+ LQ++ G+  LFI+HDL++VR +A  + V++ G++VE 
Sbjct: 440 LLDEPTSALDRTVQKQVVALLRQLQEKHGLTYLFISHDLAVVRALAHDMIVIKDGKVVEQ 499

Query: 239 NACHTLFAAPAHPYTQQLINA 259
            A H +F +P HPYT++L+ A
Sbjct: 500 GASHDVFDSPRHPYTKELLAA 520