Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., ABC transporter from Pseudomonas syringae pv. syringae B728a

 Score =  406 bits (1043), Expect = e-117
 Identities = 237/535 (44%), Positives = 322/535 (60%), Gaps = 13/535 (2%)

Query: 1   MNDWVLKID--NLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRL 58
           MND    ID  +LSV +   GQ       VS  +ARGET+A+VGESGSGKS  ANAIL L
Sbjct: 1   MNDTAQLIDIRHLSVAYRFDGQINQAVRNVSFQVARGETVAIVGESGSGKSTMANAILGL 60

Query: 59  LPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVET 118
           LP  +A    G +H    D     ER  R IRGG IG++ Q+PMVSLNP  +IG+Q+ E 
Sbjct: 61  LPDNAA-ITGGELHVDGHDLGHAGEREKRRIRGGTIGLVPQDPMVSLNPTLRIGRQIAEA 119

Query: 119 LAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELL 178
           L +  G R  A +   +E L +VG+  P ++   YPHELSGG RQRV+IA+AL   P L+
Sbjct: 120 LLLAHGRRYPAVDADVLELLQQVGLDKPVLRARQYPHELSGGMRQRVLIAIALAGNPRLI 179

Query: 179 IADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVET 238
           IADEPT+ALDV+VQ +ILD L+ L  E G+++L ITHDL +    ADRV VM  G+LVE 
Sbjct: 180 IADEPTSALDVTVQRRILDHLQRLVAERGISLLIITHDLGVAADRADRVLVMNKGELVEQ 239

Query: 239 NACHTLFAAPAHPYTQQLINADPR-------GVPVPTAMDAPTLLQAEKLRVWFPIKGGY 291
                +  AP H YT+ LI A P          P P A  A  LL    +   + +   Y
Sbjct: 240 GPPQQILIAPRHAYTRALIAAAPAFGQRKSPATPRPVASSARPLLTLNNIGKTYRLP--Y 297

Query: 292 FRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKL-LASQGAIRFAGQDLQ 350
            +      +A+ D++F +  GQ+L +VGESGSGKST     L L   + G +    QD+ 
Sbjct: 298 VKGEDTDFQALQDVNFKVYAGQTLAIVGESGSGKSTALRIALGLEKPTHGRVLLDDQDVT 357

Query: 351 ALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQE 410
            L  RE  P R ++Q+V Q+P++AL+PR ++ + I E L     L   E++ A   +++ 
Sbjct: 358 DLGWREFRPLRRRIQLVQQNPFAALDPRFTLFESIVEPLVSFGLLKGRELEQAARRLIER 417

Query: 411 VGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDL 470
           V L V    R P E SGGQRQR+AIARAL L+P+ +LLDEP S+LD +VQAQ+LDLL +L
Sbjct: 418 VQLPVAYLDRLPRELSGGQRQRVAIARALALQPDLLLLDEPVSALDVSVQAQILDLLVEL 477

Query: 471 QQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           Q +  + Y+ +SHDLAV+ ++ H  +V+K G+ VE G  + +F  P   YTQ+L+
Sbjct: 478 QAESGIAYVLVSHDLAVVASVAHQVLVLKHGKTVEQGLAEDVFARPEASYTQELI 532



 Score =  154 bits (389), Expect = 8e-42
 Identities = 97/236 (41%), Positives = 136/236 (57%), Gaps = 8/236 (3%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDVDTLRCSERA 85
           + V+  +  G+TLA+VGESGSGKS      L L  +   H   G +   D D      R 
Sbjct: 309 QDVNFKVYAGQTLAIVGESGSGKSTALRIALGL--EKPTH---GRVLLDDQDVTDLGWRE 363

Query: 86  LRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGIRH 145
            R +R  RI ++ Q P  +L+P   + + +VE L     L+    EQ A   + +V +  
Sbjct: 364 FRPLRR-RIQLVQQNPFAALDPRFTLFESIVEPLVSFGLLKGRELEQAARRLIERVQL-- 420

Query: 146 PEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQQE 205
           P   ++  P ELSGG+RQRV IA AL  +P+LL+ DEP +ALDVSVQAQILDLL  LQ E
Sbjct: 421 PVAYLDRLPRELSGGQRQRVAIARALALQPDLLLLDEPVSALDVSVQAQILDLLVELQAE 480

Query: 206 LGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADP 261
            G+A + ++HDL++V  +A +V V++ G+ VE      +FA P   YTQ+LI A P
Sbjct: 481 SGIAYVLVSHDLAVVASVAHQVLVLKHGKTVEQGLAEDVFARPEASYTQELIAAIP 536