Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., ABC transporter from Pseudomonas syringae pv. syringae B728a

 Score =  593 bits (1528), Expect = e-174
 Identities = 302/525 (57%), Positives = 399/525 (76%), Gaps = 6/525 (1%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           M++ +++I +LSV F      + V   +SL + RGE LALVGESGSGKSVTA++IL+LLP
Sbjct: 1   MSENLIEIRDLSVAFN----GQKVVSNLSLDVRRGECLALVGESGSGKSVTAHSILQLLP 56

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
           + S    +GSI +     +   +R LR +RG RI MIFQEPM SLNPLH + KQ+ ETL 
Sbjct: 57  R-SGTLTTGSITYRGQQLVGADDRTLRELRGNRIAMIFQEPMTSLNPLHSVAKQIGETLL 115

Query: 121 IHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIA 180
           +HRG+    A+++ +E L  VGI+ PE ++ AYPHELSGG+RQRVMIAMAL  EPELLIA
Sbjct: 116 LHRGVSGREAQKRIVELLELVGIQQPEKRLKAYPHELSGGQRQRVMIAMALACEPELLIA 175

Query: 181 DEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNA 240
           DEPTTALDV+VQ +IL LLK LQQ L M++L I+HDL++V  +A RV VM++G++VE + 
Sbjct: 176 DEPTTALDVTVQRKILLLLKELQQRLNMSLLLISHDLNLVHSVAQRVCVMRAGEIVEQSD 235

Query: 241 CHTLFAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIK 300
           C +LF +P HPY++ L++A+P G P+P      T+LQ + L+VWF + GG  RR + Y+K
Sbjct: 236 CKSLFKSPQHPYSRLLLDAEPAGEPLPRDT-RETVLQVDNLKVWFSLTGGILRRHREYLK 294

Query: 301 AVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGAIRFAGQDLQALKRREMLPY 360
           AV D+S ++ +G++LG+VGESGSGKST G AIL+LL S+G+IRF GQ L  L +++M P+
Sbjct: 295 AVDDISLSIERGKTLGIVGESGSGKSTLGQAILRLLESRGSIRFRGQALDGLSQKQMRPW 354

Query: 361 RSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHR 420
           R +MQVVFQDPY +L+PRMSVAQ+I EGL VHSQ N  + D  +   ++EVG+D  +RHR
Sbjct: 355 RKEMQVVFQDPYGSLSPRMSVAQIISEGLEVHSQYNPAKCDAEVIRALEEVGIDPQSRHR 414

Query: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480
           YP+EFSGGQRQRIAIARALVLKP  ILLDEPTS+LDRTVQ QV+ LL++LQ+K+ LTYLF
Sbjct: 415 YPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRELQEKHGLTYLF 474

Query: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           ISHDLAV++AL H  IV+K G++VE G +  +FE P HPYTQ+L+
Sbjct: 475 ISHDLAVVKALAHDVIVVKDGKVVERGASHDVFEAPQHPYTQELL 519



 Score =  185 bits (469), Expect = 4e-51
 Identities = 108/262 (41%), Positives = 161/262 (61%), Gaps = 16/262 (6%)

Query: 5   VLKIDNLSVGFGIAG-------QARPVTEGVSLTIARGETLALVGESGSGKSVTANAILR 57
           VL++DNL V F + G       +     + +SL+I RG+TL +VGESGSGKS    AILR
Sbjct: 269 VLQVDNLKVWFSLTGGILRRHREYLKAVDDISLSIERGKTLGIVGESGSGKSTLGQAILR 328

Query: 58  LLPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVE 117
           LL         GSI F        S++ +R  R   + ++FQ+P  SL+P   + + + E
Sbjct: 329 LLES------RGSIRFRGQALDGLSQKQMRPWRK-EMQVVFQDPYGSLSPRMSVAQIISE 381

Query: 118 TLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPEL 177
            L +H        + + I  L +VGI  P+ + + YPHE SGG+RQR+ IA AL+ +P L
Sbjct: 382 GLEVHSQYNPAKCDAEVIRALEEVGI-DPQSR-HRYPHEFSGGQRQRIAIARALVLKPAL 439

Query: 178 LIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVE 237
           ++ DEPT+ALD +VQ Q++ LL+ LQ++ G+  LFI+HDL++V+ +A  V V++ G++VE
Sbjct: 440 ILLDEPTSALDRTVQKQVVALLRELQEKHGLTYLFISHDLAVVKALAHDVIVVKDGKVVE 499

Query: 238 TNACHTLFAAPAHPYTQQLINA 259
             A H +F AP HPYTQ+L+ A
Sbjct: 500 RGASHDVFEAPQHPYTQELLAA 521