Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., peptide transport ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  435 bits (1119), Expect = e-126
 Identities = 242/543 (44%), Positives = 338/543 (62%), Gaps = 18/543 (3%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           M   +L + +L+V        + V E +S  +  G TL L GESGSGKS+TA ++++LLP
Sbjct: 1   MTSSLLSVKDLTVQVATPTGPKVVVERLSFDLLPGRTLCLAGESGSGKSMTALSLMQLLP 60

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
           K  A    GS      D L   E  +R IRG +IGMIFQEPM SLNP+  +G QL+  + 
Sbjct: 61  KPMARIAGGSATLDGEDILALPEARMRRIRGRKIGMIFQEPMTSLNPVMTVGNQLIGAIT 120

Query: 121 IHRGLRAT-AAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLI 179
            H       AA  +A E L +V I  PE ++  YPHELSGG RQR++IAMAL   P++LI
Sbjct: 121 AHGNTSGRRAARARAAELLDQVQIPEPERRLGQYPHELSGGLRQRIVIAMALAQNPKILI 180

Query: 180 ADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETN 239
           ADEPTTALDV+VQAQIL L++ LQ + G++++ ITHD+ +V  +AD V VM+ G+ VE  
Sbjct: 181 ADEPTTALDVTVQAQILALIRKLQADHGISVIMITHDMGVVAEMADEVLVMKHGRTVEHA 240

Query: 240 ACHTLFAAPAHPYTQQLINADPR-----GVPVPT-----AMDAPT-------LLQAEKLR 282
               LFA P   YT++L++A PR     G   P      A++A +       +LQ E L 
Sbjct: 241 TSRDLFAHPQDAYTKELLSAVPRLGEMAGTETPKRAAGKAVEAGSEPGAEQPMLQVENLT 300

Query: 283 VWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGAI 342
           V F IKGG  +R    + AV  +S ++ +G++L LVGESG GKSTTG A+L L+   G I
Sbjct: 301 VRFDIKGGILQRPVRRLHAVEGISLSVRRGETLSLVGESGCGKSTTGKALLNLVPWTGDI 360

Query: 343 RFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDH 402
           R  G+  + L+   M P    +Q++FQDPY++L+PRM V  ++ E L +H   +  E+  
Sbjct: 361 RVDGRSTRGLRGSTMRPILRDVQMIFQDPYASLDPRMRVGDLVAEPLVIHGLASGSELRD 420

Query: 403 AICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQ 462
            +  + + VGL  +   RYP+EFSGGQRQRI IARAL L P+ I+ DE  ++LD ++QAQ
Sbjct: 421 RVEYLFKRVGLSPEQMKRYPHEFSGGQRQRICIARALSLSPKLIVADESVAALDVSIQAQ 480

Query: 463 VLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQ 522
           VLDLL+D+Q +  ++YLFISHD+AV+  + H   VM  G  VE G  + +FE+P HPYT+
Sbjct: 481 VLDLLQDIQDETGVSYLFISHDMAVVEQISHRVAVMYMGRFVEMGTRRQIFESPQHPYTK 540

Query: 523 QLV 525
           +L+
Sbjct: 541 KLM 543



 Score =  205 bits (522), Expect = 3e-57
 Identities = 129/304 (42%), Positives = 183/304 (60%), Gaps = 39/304 (12%)

Query: 5   VLKIDNLSVGFGIAGQA--RPV-----TEGVSLTIARGETLALVGESGSGKSVTANAILR 57
           +L+++NL+V F I G    RPV      EG+SL++ RGETL+LVGESG GKS T  A+L 
Sbjct: 293 MLQVENLTVRFDIKGGILQRPVRRLHAVEGISLSVRRGETLSLVGESGCGKSTTGKALLN 352

Query: 58  LLPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGR-------IGMIFQEPMVSLNPLHK 110
           L+P             GD+   R   R+ RG+RG         + MIFQ+P  SL+P  +
Sbjct: 353 LVP-----------WTGDI---RVDGRSTRGLRGSTMRPILRDVQMIFQDPYASLDPRMR 398

Query: 111 IGKQLVETLAIHRGLRATAAEQKAIEWLGK-VGIRHPEIKINAYPHELSGGERQRVMIAM 169
           +G  + E L IH GL + +  +  +E+L K VG+   ++K   YPHE SGG+RQR+ IA 
Sbjct: 399 VGDLVAEPLVIH-GLASGSELRDRVEYLFKRVGLSPEQMK--RYPHEFSGGQRQRICIAR 455

Query: 170 ALINEPELLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAV 229
           AL   P+L++ADE   ALDVS+QAQ+LDLL+ +Q E G++ LFI+HD+++V +I+ RVAV
Sbjct: 456 ALSLSPKLIVADESVAALDVSIQAQVLDLLQDIQDETGVSYLFISHDMAVVEQISHRVAV 515

Query: 230 MQSGQLVETNACHTLFAAPAHPYTQQLINADPRGVP-------VPTAMDAPTLLQAEKLR 282
           M  G+ VE      +F +P HPYT++L+ A P   P       VP A D P+ ++A    
Sbjct: 516 MYMGRFVEMGTRRQIFESPQHPYTKKLMAAVPVADPGRVRRDFVPKAEDLPSPVRALDYA 575

Query: 283 VWFP 286
             FP
Sbjct: 576 PSFP 579