Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  497 bits (1279), Expect = e-145
 Identities = 266/526 (50%), Positives = 363/526 (69%), Gaps = 5/526 (0%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           V+    ++V F +        + VS  + RGET+A+VGESGSGKSVTA  ++ LL K + 
Sbjct: 25  VIDARKVAVSFKVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRAT 84

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
                 I +   D L+ S+R  R +RG RI MIFQEPM SLNP++ IG Q++E +  HR 
Sbjct: 85  IAPQARIEYDGRDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRR 144

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           +   AA ++A+E L  V I  PE ++N YPH+LSGG+RQRVMIAMAL N+P++LIADEPT
Sbjct: 145 VSRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPT 204

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALDV+VQAQIL+L++ LQQELGMA++ ITHDL++VR+ +D V VMQ G++ E N    L
Sbjct: 205 TALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEAL 264

Query: 245 FAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPI-KGGYFRRTQAYIKAVT 303
           FA P H YT++L++++P G   P   DAP LL    +RV F + KGG+FR     + AV 
Sbjct: 265 FADPQHAYTRRLLSSEPSGSANPLPDDAPILLDGRNVRVSFTLKKGGFFRPEFKELVAVD 324

Query: 304 DMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGA-IRFAGQDLQALKRREMLPYRS 362
            +S  L + ++LGLVGESGSGK+T G A+++LL + G  I F G+ +    R+ M P RS
Sbjct: 325 GLSLNLRRHETLGLVGESGSGKTTFGQALIRLLNTDGGEIYFEGEPIHDKDRKGMRPLRS 384

Query: 363 KMQVVFQDPYSALNPRMSVAQVIGEGLRVH--SQLNDDEIDHAICAVMQEVGLDVDTRHR 420
           K+Q+VFQDP+S+LNPRMSV Q+I EGL V+   +   D +     A++   G+  +   R
Sbjct: 385 KIQIVFQDPFSSLNPRMSVGQIIEEGLIVNGMGENRKDRLKRVEDALV-SAGMPSNILSR 443

Query: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480
           +P+EFSGGQRQRIAIARA+ L+PEFILLDEPTS+LD +VQAQ+++LL+ LQ +  L+YL 
Sbjct: 444 FPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLV 503

Query: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLVR 526
           ISHDL V+RALCH  +VM+ G+IVE G    +  NP   YT++LV+
Sbjct: 504 ISHDLKVVRALCHRVVVMQDGKIVEEGPVSEVLNNPKTAYTERLVK 549



 Score =  162 bits (410), Expect = 3e-44
 Identities = 97/236 (41%), Positives = 140/236 (59%), Gaps = 11/236 (4%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLL-PKGSAHYLSGS-IHFGDVDTLRCSE 83
           +G+SL + R ETL LVGESGSGK+    A++RLL   G   Y  G  IH  D        
Sbjct: 324 DGLSLNLRRHETLGLVGESGSGKTTFGQALIRLLNTDGGEIYFEGEPIHDKD-------R 376

Query: 84  RALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGI 143
           + +R +R  +I ++FQ+P  SLNP   +G Q++E   I  G+     ++        V  
Sbjct: 377 KGMRPLRS-KIQIVFQDPFSSLNPRMSVG-QIIEEGLIVNGMGENRKDRLKRVEDALVSA 434

Query: 144 RHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQ 203
             P   ++ +PHE SGG+RQR+ IA A+  EPE ++ DEPT+ALD+SVQAQI++LL+ LQ
Sbjct: 435 GMPSNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIELLRRLQ 494

Query: 204 QELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINA 259
            E G++ L I+HDL +VR +  RV VMQ G++VE      +   P   YT++L+ A
Sbjct: 495 DERGLSYLVISHDLKVVRALCHRVVVMQDGKIVEEGPVSEVLNNPKTAYTERLVKA 550