Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  511 bits (1316), Expect = e-149
 Identities = 266/526 (50%), Positives = 363/526 (69%), Gaps = 3/526 (0%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           M D +L +  L V F          +G+ L +  GETLA+VGESGSGKS T   I+ LL 
Sbjct: 4   MKDSILAVRGLKVDFYTPDGTVEAVKGIDLDVRSGETLAVVGESGSGKSQTMMGIMGLLA 63

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
           K     ++GS  +   + +  + +AL  +RG +I MIFQEPM SL+PL+ IG+Q+ E + 
Sbjct: 64  KNGT--VTGSARYRGQELVGLAPKALNKVRGSKITMIFQEPMTSLDPLYTIGRQIAEPIV 121

Query: 121 IHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIA 180
            HRG     A ++ +E L  VGI  P  +I++YPHELSGG+RQRVMIAMAL NEP++LIA
Sbjct: 122 HHRGGSFKEARRRVLELLELVGIPEPGRRIDSYPHELSGGQRQRVMIAMALANEPDILIA 181

Query: 181 DEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNA 240
           DEPTTALDV++QAQILDLLKSLQ+  GMA++ ITHDL IV+  ADRVAVM+ G++VE   
Sbjct: 182 DEPTTALDVTIQAQILDLLKSLQRRFGMAIVLITHDLGIVKYFADRVAVMRRGEVVEQGM 241

Query: 241 CHTLFAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIK 300
              +F  P   YT+ L+ A+P G       +AP +L+   + V + I GG FR   A  +
Sbjct: 242 TADIFERPKGDYTRMLLEAEPSGRKASPPDNAPIILEGRNVAVDYTIPGGLFRGASAAFR 301

Query: 301 AVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGAIRFAGQDLQALKRREMLPY 360
           AV  ++  L +GQ++G+VGESGSGKST G A+L+LL S G  RF   D+    R  M P 
Sbjct: 302 AVDGVNLRLRQGQTIGIVGESGSGKSTLGRALLRLLPSSGYYRFGSTDISGFDRGAMRPL 361

Query: 361 RSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHS-QLNDDEIDHAICAVMQEVGLDVDTRH 419
           R ++Q+VFQDPY +L+PR +V ++I EGL VH   L+  + D    A ++EVGLD  +R+
Sbjct: 362 RRQLQLVFQDPYGSLSPRRTVGEIITEGLHVHEPDLSRADRDRRAIAALKEVGLDPASRN 421

Query: 420 RYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYL 479
           RYP+EFSGGQRQRIAIARA++LKP+ ++LDEPTS+LDR+VQ QV++LL+DLQ+K+ L+Y+
Sbjct: 422 RYPHEFSGGQRQRIAIARAIILKPKVVILDEPTSALDRSVQGQVIELLRDLQEKHGLSYI 481

Query: 480 FISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           FISHDL+V++A+  + IVMK G IVE GET ++F+ P  PYT+ L+
Sbjct: 482 FISHDLSVVKAMSDYVIVMKNGRIVEEGETDAIFDAPREPYTKTLI 527



 Score =  185 bits (469), Expect = 4e-51
 Identities = 106/263 (40%), Positives = 164/263 (62%), Gaps = 17/263 (6%)

Query: 5   VLKIDNLSVGFGIAG-------QARPVTEGVSLTIARGETLALVGESGSGKSVTANAILR 57
           +L+  N++V + I G        A    +GV+L + +G+T+ +VGESGSGKS    A+LR
Sbjct: 276 ILEGRNVAVDYTIPGGLFRGASAAFRAVDGVNLRLRQGQTIGIVGESGSGKSTLGRALLR 335

Query: 58  LLPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVE 117
           LLP       SG   FG  D       A+R +R  ++ ++FQ+P  SL+P   +G+ + E
Sbjct: 336 LLPS------SGYYRFGSTDISGFDRGAMRPLRR-QLQLVFQDPYGSLSPRRTVGEIITE 388

Query: 118 TLAIHR-GLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPE 176
            L +H   L     +++AI  L +VG+       N YPHE SGG+RQR+ IA A+I +P+
Sbjct: 389 GLHVHEPDLSRADRDRRAIAALKEVGL--DPASRNRYPHEFSGGQRQRIAIARAIILKPK 446

Query: 177 LLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLV 236
           ++I DEPT+ALD SVQ Q+++LL+ LQ++ G++ +FI+HDLS+V+ ++D V VM++G++V
Sbjct: 447 VVILDEPTSALDRSVQGQVIELLRDLQEKHGLSYIFISHDLSVVKAMSDYVIVMKNGRIV 506

Query: 237 ETNACHTLFAAPAHPYTQQLINA 259
           E      +F AP  PYT+ LI A
Sbjct: 507 EEGETDAIFDAPREPYTKTLIGA 529