Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  434 bits (1117), Expect = e-126
 Identities = 250/522 (47%), Positives = 326/522 (62%), Gaps = 5/522 (0%)

Query: 6   LKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAH 65
           L ID+L V    +        G+SLT+   E + LVGESGSGKS+TA AI+RLL   S  
Sbjct: 13  LIIDDLRVALPKSADRPFALNGISLTVGADEIVCLVGESGSGKSMTAGAIMRLLGP-STP 71

Query: 66  YLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGL 125
              G I    VD L  SE A+R +RG R+GMIFQEPM +LNPLH IG Q+ ET   H  L
Sbjct: 72  ITGGRILLEGVDLLGLSEAAMRAVRGARVGMIFQEPMTALNPLHTIGDQIAETFRTHGTL 131

Query: 126 RATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTT 185
                E++ ++ L +V I  P     AYPHELSGG+RQR MIAMAL  EP LLIADEPTT
Sbjct: 132 GRAEIERRVLDLLAEVLIPDPVAAAKAYPHELSGGQRQRAMIAMALALEPALLIADEPTT 191

Query: 186 ALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLF 245
           ALDV+ QAQIL L++ LQ+  G  +LF+THD  +V  IADRVAVM+ G++VE  A   + 
Sbjct: 192 ALDVTTQAQILALIRDLQRRKGTGVLFVTHDFGVVAEIADRVAVMRGGEVVEEGAAAQVL 251

Query: 246 AAPAHPYTQQLINADPRGVPV-PTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTD 304
             P HPYT+ LI A P  VP  P  +  P LL+ E L   +   GG+F R      AV D
Sbjct: 252 NHPLHPYTRALIAAVPPLVPAPPRPVTGPPLLRVEGLSKTYR-SGGFFGRGGRVTHAVKD 310

Query: 305 MSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQ-GAIRFAGQDLQALKRREMLPYRSK 363
           +SFTL +G +LG+VGESGSGKST    +++LL S+ G+I     DL AL   +      +
Sbjct: 311 VSFTLRRGATLGIVGESGSGKSTLARCVVRLLTSESGSIHLDDIDLSALTDNDWHRESRR 370

Query: 364 MQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHRYPN 423
           +Q+VFQDPY +LNPR  V +++ +G  V       E++  +  +   VGLD     R+P+
Sbjct: 371 IQMVFQDPYGSLNPRRRVGELVAQGPIVRGAPR-REVEARVRELFALVGLDPKAVDRFPH 429

Query: 424 EFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISH 483
           EFSGGQRQRI +ARAL L P+ ++ DE  S+LD +VQAQVL LL DL+++  L+ LFI+H
Sbjct: 430 EFSGGQRQRIGLARALALDPDVLVADEAVSALDVSVQAQVLALLADLRERLNLSVLFITH 489

Query: 484 DLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           DL V   +    +VMK G +VE G T  +F +P HPYT+ L+
Sbjct: 490 DLRVAGQIADDILVMKDGAVVEAGPTARVFADPHHPYTKTLM 531



 Score =  182 bits (462), Expect = 3e-50
 Identities = 111/259 (42%), Positives = 154/259 (59%), Gaps = 11/259 (4%)

Query: 15  FGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFG 74
           FG  G+     + VS T+ RG TL +VGESGSGKS  A  ++RLL   S     GSIH  
Sbjct: 298 FGRGGRVTHAVKDVSFTLRRGATLGIVGESGSGKSTLARCVVRLLTSES-----GSIHLD 352

Query: 75  DVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKA 134
           D+D    ++         RI M+FQ+P  SLNP  ++G +LV    I RG      E + 
Sbjct: 353 DIDLSALTDNDWHR-ESRRIQMVFQDPYGSLNPRRRVG-ELVAQGPIVRGAPRREVEARV 410

Query: 135 IEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQ 194
            E    VG+  P+  ++ +PHE SGG+RQR+ +A AL  +P++L+ADE  +ALDVSVQAQ
Sbjct: 411 RELFALVGL-DPKA-VDRFPHEFSGGQRQRIGLARALALDPDVLVADEAVSALDVSVQAQ 468

Query: 195 ILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQ 254
           +L LL  L++ L +++LFITHDL +  +IAD + VM+ G +VE      +FA P HPYT+
Sbjct: 469 VLALLADLRERLNLSVLFITHDLRVAGQIADDILVMKDGAVVEAGPTARVFADPHHPYTK 528

Query: 255 QLINADP--RGVPVPTAMD 271
            L+ A P    +P  TA D
Sbjct: 529 TLMAAVPGRAWMPPVTAAD 547