Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  388 bits (996), Expect = e-112
 Identities = 227/529 (42%), Positives = 326/529 (61%), Gaps = 11/529 (2%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           VL + +L++              +S  +  G+ + L+GESGSGKSV A+AI+ LLP G  
Sbjct: 10  VLSVRDLTIALPPGADRPHAVSDISFDVPPGKVVCLLGESGSGKSVIASAIMGLLPPG-L 68

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
             + G+I       L CS+ ALR +RG  + M+FQEPM +LNP+   G Q+ E LA H  
Sbjct: 69  RPVKGAIELRGQALLSCSQAALRALRGTTMAMVFQEPMTALNPVMTCGAQIDEMLAQH-- 126

Query: 125 LRATAAEQKA--IEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADE 182
           ++   AE++A  +  + +V +  PE    +YPH+LSGG+RQR++IAMALI +P LLI DE
Sbjct: 127 VKRPKAERRAAILAIMERVRLPEPERIYASYPHQLSGGQRQRIVIAMALILKPALLICDE 186

Query: 183 PTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACH 242
           PTTALDV+ QA+IL L+  LQ+E G A+LFITHD  +V  IAD V V++ G ++E    H
Sbjct: 187 PTTALDVTTQAEILKLILELQRENGTAVLFITHDFGVVAEIADEVVVLELGAMIEKGDKH 246

Query: 243 TLFAAPAHPYTQQLINADPRGVPV--PTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIK 300
            +  AP  PYT+ L+ A P   P   P   +A  LLQA+ L   + + GG+  + +  ++
Sbjct: 247 AVLTAPRQPYTKMLLAAVPELSPPDRPAVENAYPLLQAKDLCKTY-VSGGWPGKRRV-VQ 304

Query: 301 AVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLL-ASQGAIRFAGQDLQALKRREMLP 359
           A   +S  +  G+++G+VGESGSGKST    I +L+  + G I   G+ +    +RE+ P
Sbjct: 305 AAKGVSLMVRPGETIGIVGESGSGKSTVARCIARLIDPTSGDIFADGRSVATATKRELSP 364

Query: 360 YRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRH 419
           +R  +QVVFQDPY +LNPR +V + I EG  V+  +   E       +M  V L  D   
Sbjct: 365 FRRHVQVVFQDPYRSLNPRQTVGESIIEG-PVNFGVPRAEAWAKAEELMHLVRLKPDALR 423

Query: 420 RYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYL 479
           RYPNEFSGGQRQRI+IARAL   P+ ++ DE  S+LD +VQAQ+L LL+++Q + ++  L
Sbjct: 424 RYPNEFSGGQRQRISIARALACNPKVLIADEAVSALDVSVQAQILTLLEEIQGRLRIGIL 483

Query: 480 FISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLVRLS 528
           F++HDL V   +C H +VM  GEIVE G  + +F  P HPYT++L+  S
Sbjct: 484 FVTHDLRVASQICDHVLVMYKGEIVEEGAIRDVFFAPRHPYTRKLLAAS 532



 Score =  171 bits (434), Expect = 5e-47
 Identities = 105/251 (41%), Positives = 148/251 (58%), Gaps = 11/251 (4%)

Query: 13  VGFGIAGQARPV--TEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGS 70
           V  G  G+ R V   +GVSL +  GET+ +VGESGSGKS  A  I RL+        SG 
Sbjct: 292 VSGGWPGKRRVVQAAKGVSLMVRPGETIGIVGESGSGKSTVARCIARLIDP-----TSGD 346

Query: 71  IHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAA 130
           I          ++R L   R   + ++FQ+P  SLNP   +G+ ++E   ++ G+    A
Sbjct: 347 IFADGRSVATATKRELSPFRR-HVQVVFQDPYRSLNPRQTVGESIIEG-PVNFGVPRAEA 404

Query: 131 EQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVS 190
             KA E +  V ++   ++   YP+E SGG+RQR+ IA AL   P++LIADE  +ALDVS
Sbjct: 405 WAKAEELMHLVRLKPDALR--RYPNEFSGGQRQRISIARALACNPKVLIADEAVSALDVS 462

Query: 191 VQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAH 250
           VQAQIL LL+ +Q  L + +LF+THDL +  +I D V VM  G++VE  A   +F AP H
Sbjct: 463 VQAQILTLLEEIQGRLRIGILFVTHDLRVASQICDHVLVMYKGEIVEEGAIRDVFFAPRH 522

Query: 251 PYTQQLINADP 261
           PYT++L+ A P
Sbjct: 523 PYTRKLLAASP 533