Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., Probable dipeptide-transport ATP-binding protein ABC transporter DppD from Mycobacterium tuberculosis H37Rv

 Score =  400 bits (1027), Expect = e-116
 Identities = 235/534 (44%), Positives = 329/534 (61%), Gaps = 20/534 (3%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           +L ++ L V FG      P   GV L +  G+T+A+VGESGSGKS TA AIL LLP G  
Sbjct: 8   LLSVEGLEVTFGTDA---PAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGG- 63

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
              +G + F   D      + LR IRG  IG + Q+PM +LNP+ K+G Q+ E L  +  
Sbjct: 64  RITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTD 123

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
            RA  A ++A+E L + G+  P  +   YPH+LSGG  QR +IA+ L   P LLIADEPT
Sbjct: 124 GRA--ARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPT 181

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           +ALDV+VQ Q+LD L+ L  ELG A+L ITHDL++  + A+ V V++ G +VE+ A  ++
Sbjct: 182 SALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSI 241

Query: 245 FAAPAHPYTQQLINADP----RGVPVPTAMDAPT------LLQAEKLRVWFPIKGGYFRR 294
             +P H YT++L+ A P    R    P +    T      L+ +E  +++   +G  +RR
Sbjct: 242 LQSPQHEYTRRLVAAAPSLTARSRRPPESRSRATTQAGDILVVSELTKIYRESRGAPWRR 301

Query: 295 TQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLA-SQGAIRFAGQ-DLQAL 352
            ++  +AV  +SF L +  +L +VGESGSGKST    +L LL  + G + F G  D+ AL
Sbjct: 302 VES--RAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSGTVVFDGTYDVGAL 359

Query: 353 KRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVG 412
            R ++L +R ++Q VFQ+PYS+L+P  SV + I E LRVH   +  +   A+  ++ +V 
Sbjct: 360 ARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELVDQVA 419

Query: 413 LDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQ 472
           L      R P E SGGQRQR+AIARAL L+PE ++ DE  S+LD  VQAQ+LDLL DLQ 
Sbjct: 420 LPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQA 479

Query: 473 KYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLVR 526
              LTYLFISHDLAVIR +    +VM+AG +VEH  T+ +F  P H YT+QL++
Sbjct: 480 DLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQ 533



 Score =  168 bits (426), Expect = 4e-46
 Identities = 101/243 (41%), Positives = 144/243 (59%), Gaps = 9/243 (3%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHF-GDVDTLRCSER 84
           +GVS  + R  TLA+VGESGSGKS  A  +L LL        SG++ F G  D    +  
Sbjct: 308 DGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQP-----TSGTVVFDGTYDVGALARD 362

Query: 85  ALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGIR 144
            +   R  R+  +FQ P  SL+P++ + + + E L +H        ++   E + +V + 
Sbjct: 363 QVLAFRR-RVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELVDQVAL- 420

Query: 145 HPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQQ 204
            P   +   P ELSGG+RQRV IA AL   PE+L+ DE  +ALDV VQAQILDLL  LQ 
Sbjct: 421 -PSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQA 479

Query: 205 ELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADPRGV 264
           +LG+  LFI+HDL+++R+IAD V VM++G++VE  +   +F+ P H YT+QL+ A P   
Sbjct: 480 DLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGAP 539

Query: 265 PVP 267
             P
Sbjct: 540 SAP 542