Pairwise Alignments

Query, 261 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 31/259 (11%)

Query: 8   ASLCLMSTCLHAKPQRVTIFADDAYPPYSYAENGRAVGIYPEILRAADVLM-TEFEIELQ 66
           A +CL+   + A+ +   +  ++ + PY+Y EN +  G+  EI+RA   L   +FE+ LQ
Sbjct: 9   ALICLLLGTVDARAEEYQVITEE-WAPYNYQENNQLTGMTTEIVRAIMALTGNDFEVLLQ 67

Query: 67  PIPWRRGLKLLEAGRIFALLPPYYYPQRRPYIHPYSDPILDEEVVVF------CQNAWLS 120
           P    R  ++L+      +   +  P+R P ++ +  PI++E +  +        N+   
Sbjct: 68  PS--MRATQVLKTRPKTIMYSLFRTPEREP-LYKWVGPIVEESIHPYQLASTPPVNSLEQ 124

Query: 121 KRKSTEWPRDFYGLTIGMNDGFSLGGQAFWKAVEEKKIEVKYANGNRVNLLKLRGDRIDC 180
              + +      GL   M    SLG     K+  E K+  +     R  ++    D    
Sbjct: 125 LLHAPQITTRHAGLVPQMLQ--SLGFNNLDKSATESKLLYRMLLAGRTGIIIGDTDAGVA 182

Query: 181 YVNDRISILWELTRLKREGIVDTVNFSMAAKISLEQGYIGFTNRNLEQYPYQSQFVAAFN 240
           Y + +++I     R             +  ++     YI F+  +      + + VAA+ 
Sbjct: 183 YYSRQLNIAPGTLR------------RIPIELYRSSLYIAFSPDS------EDEVVAAWA 224

Query: 241 SALAELKSSGQLDKIVGRY 259
           SAL +L+ SG+L++I  RY
Sbjct: 225 SALEKLRRSGELERIQRRY 243