Pairwise Alignments

Query, 261 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 39/254 (15%)

Query: 17  LHAKPQRVTIFADDAYPPYSYAENGRAVGIYPEILRAADVLMTEFEIELQPI-----PWR 71
           L A  +   I   + YPP+ Y+      G+   ++ A       FE    P+     P+ 
Sbjct: 45  LPAMAKTPLISVSNDYPPF-YSPQMSEWGVVYHLVEAV------FEHAGYPLSHEFYPFI 97

Query: 72  RGLKLLEAGRIFALLPPYYYPQRRPYIHPYSDPILDEEVVVFCQNAWLSKRKSTEWP--- 128
           R   L++      ++  +Y P+R  +I  +SDP+L   + ++       KR  ++     
Sbjct: 98  RAQTLIKRELADLIIGVWYRPEREQWID-FSDPLLSVSIRLY-------KRSDSKIVFRD 149

Query: 129 -RDFYGLTIGMNDGFSLGGQAFWKAVEEKKIEVKYANGNRVNLLKLRGDRIDCYV--NDR 185
            +D     IG+  G++    AF +A     +  + A+ + VNL KL   R+D  +   D 
Sbjct: 150 IKDLKPYLIGIGRGYA-NPVAFGQA----NLNTEAASSDAVNLRKLLAGRVDLVLICEDV 204

Query: 186 ISILWELTRLKREGIVDTVNFSMAAKISLEQGYIGFTNRNLEQYPYQSQFVAAFNSALAE 245
              L E    +  G ++ V       +S+E  +IG      +  P   Q +A FN +LAE
Sbjct: 205 ARYLIERPGSEYNGKLEPVG----DPLSVELFHIGVA----KHLPNARQILADFNQSLAE 256

Query: 246 LKSSGQLDKIVGRY 259
           L  SG+L KI+  +
Sbjct: 257 LHRSGELTKILASH 270