Pairwise Alignments

Query, 261 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., hypothetical amino acid ABC transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 47/274 (17%)

Query: 5   LLFASLCL-MSTCLHAK-------PQR-----VTIFADDAYPPYSYAENGRAVGIYPEIL 51
           LL  SL L +S   HAK       PQR     +T+ A+D++PP++   N    GI  +++
Sbjct: 22  LLSTSLLLFLSVGHHAKAEENQHVPQRSPFQTITLAAEDSWPPFA---NQFGQGISHQLI 78

Query: 52  RAADVLMTEFEIELQPIPWRRGLKLLEAGR---IFALLPPYYYPQRRPYIHPYSDPILDE 108
            AA    T+ E+    +P+ R L + E G    +F +       QR      + +  L  
Sbjct: 79  EAA-FKQTQIEVNSLVVPYSRALMMAEKGAVDGVFNVTREASTEQR----FVFGNTPLFA 133

Query: 109 EVVVFCQNAWLSKRKSTEW--PRDFYGLTIGMNDGFSLGGQAFWKAVEEKKIE-VKYANG 165
               F Q   L      +W  P+   G  IG+   +  G + F K V+++++  V  A  
Sbjct: 134 AKASFYQRKKLPLIAENKWQIPK---GSMIGVIKSYEYGDE-FPKLVKQRQLNLVTVATQ 189

Query: 166 NRVNLLKLRGDRIDCYVNDRISILWELT---RLKREGIVDTVNFSMAAKISLEQGYIGFT 222
            ++  L L G RID       +++++L     L++ G+ D V  +    IS  Q Y+ F+
Sbjct: 190 QQLINLLLIG-RIDA------AVMFDLVAQENLQKMGVSDEVFPAFDNHIS--QIYLAFS 240

Query: 223 NRNLEQYPYQSQFVAAFNSALAELKSSGQLDKIV 256
             N    P  +    A +  L+ LK +GQ  +++
Sbjct: 241 KEN----PKATLLAKALDQGLSMLKENGQYQQLL 270