Pairwise Alignments

Query, 261 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 23/251 (9%)

Query: 10  LCLMSTCLHAKPQRVTIFADDAYPPYSYAE--NGRAVGIYPEILRAADVLMTE-FEIELQ 66
           +CL+        + + I A+D + PY   +  +G+ +G+ PE+++A  V  TE  EI  +
Sbjct: 11  ICLLGAASPLAAEPLVIGAEDDWAPYCALDKQSGQPLGLAPELVKA--VFATEKLEIAFR 68

Query: 67  PIPWRRGLKLLEAGRIFALLPPYYYPQRRPYIHPYSDPILDEEVVVFCQNAWLSKRKSTE 126
           P+P+ R +   ++G++          + R   + +  P+ +E++ +F          ++E
Sbjct: 69  PLPFARCMHDAKSGKVVGCFNATITEENRNQYYWHKTPMFEEDLAIFA--------LASE 120

Query: 127 WPRDFYGLTI-GMNDGFSLGGQAFWKAVEEKKIEVKYANGNRVNLLKLRGDRIDCYVNDR 185
             RD    ++ G   G +LG       ++  KI    A  +   L  L   R+D  + + 
Sbjct: 121 PNRDLQLSSLEGKRVGITLGYTYPTDFMDNTKITRFEAKSDAQILEMLVRGRVDYILMNG 180

Query: 186 ISILWELTRLKREGIVDTVNFSMAAKISLEQGYIGFTNRNLEQYPYQSQFVAAFNSALAE 245
           +    ++ + +  G V  V      KIS +  ++ F+      +P        F   L +
Sbjct: 181 MPGYLQIQQRQLTGKVIKV-----GKISTDGFWLAFS----RTHPQGEAMSKQFEEGLQK 231

Query: 246 LKSSGQLDKIV 256
           +K++G  + ++
Sbjct: 232 IKNNGTYELLI 242