Pairwise Alignments

Query, 261 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  164 bits (414), Expect = 2e-45
 Identities = 103/259 (39%), Positives = 142/259 (54%), Gaps = 11/259 (4%)

Query: 3   IGLLFASLCLMSTCL----HAKPQRVTIFADDAYPPYSYAENGRAVGIYPEILRAADVLM 58
           I L FA + L S  +    HA  Q V I  DD+YPPYSYA++G   GIY EI+R     M
Sbjct: 2   IRLCFAIVWLASCGIVFPTHAA-QPVVILCDDSYPPYSYADSGEVKGIYVEIVREIASRM 60

Query: 59  TEFEIELQPIPWRRGLKLLEAGRIFALLPPYYYPQRRPYIHPYSDPILDEEVVVFCQNAW 118
             + + +QP+PW+RGL  +  G  F ++PPYY P  RPYI  YSDPIL E + +      
Sbjct: 61  PGYAVSIQPVPWKRGLLQVMNGEAFGIIPPYYRPHERPYI-SYSDPILKERLSLVVHERS 119

Query: 119 LSKRKSTEWPRDFYGLTIGMNDGFS--LGGQAFWKAVEEKKIEVKYANGNRVNLLKLRGD 176
           ++ R    WP D+ G  IG N GFS  L  +A  KA+ E +I    +     NLLKL  D
Sbjct: 120 MT-RPREHWPDDYDGFAIGTNAGFSTPLCSKA-TKAITEGRIRWDNSGTTEQNLLKLNRD 177

Query: 177 RIDCYVNDRISILWELTRLKREGIVDTVNFSMAAKISLEQGYIGFTNRNLEQYPYQSQFV 236
           R+  YVND  SI  E  RL R G V T      A +S E G++G T+ +  ++ ++  F+
Sbjct: 178 RLQGYVNDPASIFVEWERLARRGDV-TGKLVETAVLSEEYGHLGITDNDKGRFAFKYDFI 236

Query: 237 AAFNSALAELKSSGQLDKI 255
             FN  LA ++ +G ++ I
Sbjct: 237 TQFNRVLATMQRAGTVEAI 255