Pairwise Alignments

Query, 295 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., putative DNA-binding transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  140 bits (353), Expect = 4e-38
 Identities = 86/289 (29%), Positives = 152/289 (52%), Gaps = 13/289 (4%)

Query: 8   EALHILDAIERRGSFAAAANELNRAPSSLSYQIQKLEQDLDLMIFDRSGHRANFTEAGKL 67
           +++ ++D + R GSF AAAN+L++ PS++SY ++++E+DL +++F+R     + T AG+ 
Sbjct: 5   QSMQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQVEEDLGVVLFERHHRSVSLTPAGEH 64

Query: 68  ILERGRAILAATEKLVNDATLLANGWELDITIALDGIVPAANLFPMV-EALGNISKTRVR 126
            +++ R++L     L  D   +ANGW+  ++IALD IV A  +  ++ +   +     + 
Sbjct: 65  FVKQVRSMLTHLASLKEDTKRVANGWQPTLSIALDNIVRADKISNLIADFYRHFDNVELI 124

Query: 127 IQDEILAGCWEALATGRADLLICPRIEALP--QDVKAETIGTMKMIWVAAPTHYVHRRSG 184
           I+ E+  G WEA+ATGR+D+ I     A+P   D + + +G ++  ++ +  H +     
Sbjct: 125 IRIEVFNGVWEAIATGRSDIAI-GATTAIPVGGDYRFKDMGDIEWTFLVSKHHPLAAIDR 183

Query: 185 EFNEEAREKYRAIAIADTAREQPAMSVNILQRQPRLTVSNLDAKCKALVAGLGIGTLPLQ 244
              ++    Y +I + DT+RE P     +L  Q RL V +          GLGIG +P  
Sbjct: 184 PLLDDELRSYPSICLEDTSREIPKRMTWLLDNQRRLVVPDWIRAINCFREGLGIGYMPKH 243

Query: 245 VAQPYIDKGELKAIHGSEDLE-----MDIVLAWRRNQMGEAKSWCIQYL 288
            A P++  G L      ++LE         LAW    M  A +W + YL
Sbjct: 244 FATPFVQAGALI----EKELERPKAPSPCCLAWNDANMSPAMAWVLDYL 288