Pairwise Alignments

Query, 334 a.a., D-alanine--D-alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., D-alanyl-alanine synthetase A (RefSeq) from Shewanella loihica PV-4

 Score =  339 bits (869), Expect = 7e-98
 Identities = 172/333 (51%), Positives = 226/333 (67%), Gaps = 4/333 (1%)

Query: 1   MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWF-SEQGALVYL 59
           M    +LLLCGGG  EH ISL+SANY +  L   P  +V+RVE+  +G + S+ G    L
Sbjct: 1   MNPINLLLLCGGGGDEHAISLLSANYFETSLAKLPHLNVLRVELDAKGQYQSKSGERCEL 60

Query: 60  DTNSATLNSDK--ASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNK 117
                    D+  A +P+D+V+PCIHG+PGETGDIQS  EL  +PY GC  E S N FNK
Sbjct: 61  TNRREIRFEDESLAPWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNK 120

Query: 118 ITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTE 177
           IT+K+W+ AL IPNTPYLFL Q    +I +   A   WGS+FVKAA QGSSVGCY+V   
Sbjct: 121 ITAKMWFSALGIPNTPYLFLNQLDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRVDDA 180

Query: 178 DQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEK 237
            QI   +  AF +S  V+VE+ ++ RELEV+ Y+  G+   + PGEVI   GTFY+Y+EK
Sbjct: 181 AQIPAILADAFHYSPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEK 240

Query: 238 YSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQEGQIYLNEVNT 297
           Y+A+S A T + AE ++++  + I+ YA +VF  MKLRHLSRIDFFLT EG+I LNE+NT
Sbjct: 241 YAADSKATTKVVAE-VSDEIAQQIRAYAVKVFDGMKLRHLSRIDFFLTPEGEILLNEINT 299

Query: 298 FPGMTPISMFPKMLEHNGHRFSEFLVQCVTNTL 330
           FPG+TPISMFPKML ++G  FS++L + +   L
Sbjct: 300 FPGLTPISMFPKMLANHGDDFSQYLNEAILTGL 332