Pairwise Alignments

Query, 334 a.a., D-alanine--D-alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., D-alanine--D-alanine ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  347 bits (891), Expect = e-100
 Identities = 171/337 (50%), Positives = 236/337 (70%), Gaps = 4/337 (1%)

Query: 1   MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60
           M+K  +LLLCGGGS+EH+ISL+SANY +  L  + +F+V+RV + K G +          
Sbjct: 1   MSKINLLLLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCEL 60

Query: 61  TNSATL---NSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNK 117
           TN+  +   +  KA +P+D+V+PCIHG+PGETGDIQS   L  +PY GC  EAS+N FNK
Sbjct: 61  TNNREIRFRDESKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNK 120

Query: 118 ITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTE 177
           IT+K+W+ AL IPNTPY+FL Q    +I + + A   WGSIFVKAA QGSSVGCYKV   
Sbjct: 121 ITAKMWFSALGIPNTPYIFLNQYDDEAIAQTQAALEKWGSIFVKAASQGSSVGCYKVDEA 180

Query: 178 DQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEK 237
            ++   ++ AFG++  V+VE+ +K RELEV+ YE  G++  + PGE+I    TFY+++EK
Sbjct: 181 SKVLGVLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEK 240

Query: 238 YSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQEGQIYLNEVNT 297
           Y+ +S ART + A+N+     + I+ YA + F  MKLRHLSRIDFFLT + +I LNE+NT
Sbjct: 241 YAKSSKARTDVVAQNVPTDISDQIRAYAIKAFKGMKLRHLSRIDFFLTADNEILLNEINT 300

Query: 298 FPGMTPISMFPKMLEHNGHRFSEFLVQCVTNTLVNAK 334
           FPG TPISMFPKML+++GH F+++L   V N+ + AK
Sbjct: 301 FPGSTPISMFPKMLQNHGHDFTQYL-SLVINSQLAAK 336