Pairwise Alignments

Query, 334 a.a., D-alanine--D-alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., D-alanine--D-alanine ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  134 bits (336), Expect = 4e-36
 Identities = 96/328 (29%), Positives = 152/328 (46%), Gaps = 9/328 (2%)

Query: 3   KTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSE--QGALVYLD 60
           K TI ++ GG +SE  +SL SA  I   ++   ++ +  VEM+   W  +   GA   +D
Sbjct: 2   KRTIAIVAGGDTSEFHVSLRSAQGIYSFID-KEKYTLYIVEMQGTRWEVQLPDGAKAPVD 60

Query: 61  TNSATLNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITS 120
            N  +          DF    IHG PGE G +Q   ++  IPY  CG  A+A +++K T 
Sbjct: 61  RNDFSFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTC 120

Query: 121 KLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQI 180
             +  A  +     L L Q    S +   +  G     F+K +  GSS G  KV T++QI
Sbjct: 121 NQYLKAFGVRIAESLLLRQGQSVSDEDVMEKIGL--PCFIKPSLGGSSFGVTKVKTKEQI 178

Query: 181 APAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSA 240
            PAI  AF  +++VLVE  ++  EL    Y+   K  I  P EV+     F+ Y+ KY+ 
Sbjct: 179 QPAIVKAFEEAQEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEVVT-HNEFFDYDAKYNG 237

Query: 241 NSHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQEGQIYLNEVNTFPG 300
                T      ++++    +Q     ++  +    + R+D+ +T   +I L EVNT PG
Sbjct: 238 QVDEIT---PARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTAGEKINLLEVNTTPG 294

Query: 301 MTPISMFPKMLEHNGHRFSEFLVQCVTN 328
           MT  S  P+ +   G    + +   + N
Sbjct: 295 MTTTSFIPQQVRAAGLDIKDVMTDIIEN 322