Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., putative outer membrane or exported (RefSeq) from Shewanella amazonensis SB2B

 Score =  143 bits (360), Expect = 1e-38
 Identities = 111/400 (27%), Positives = 195/400 (48%), Gaps = 29/400 (7%)

Query: 1   MKRISLSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRRN 60
           MK I+ S+G  L    P +F+A    EAR DA+GG GV S +    P+ NPAL+++    
Sbjct: 3   MKLIAASLGLILC---PYSFAAQDVFEARSDALGGTGVASASLEAAPWMNPALLSLPGYT 59

Query: 61  D-DAGMILPSIGLSYNDPNDLITDLDKVSD----IINQSSKGDYSNIGELNKS----LTA 111
           + D G+++P +G   +D +++    D + D    +     +GD   I    ++    L  
Sbjct: 60  EGDFGLLIPVLGAEVSDQDNMTDKFDTLEDNYDGLDGAIDRGDVDAIDSFRQALLGDLRG 119

Query: 112 MQGDVLNAELGGVVAFAIPNQFISANVFGKAYTESF-VSPIIDSRVCADDLCELERAKA- 169
           + G+   A  G   +FA+P + IS  ++ ++Y +   ++ I D+ +   +  + +   A 
Sbjct: 120 LDGNTAYASAGIGFSFAMPTKGISWGIYYRSYLDGIALADISDADIQLLEALDPQAPPAL 179

Query: 170 ----SSVNAVSVGITELGITLAKYQTFLGQHIAFGITPKLQRVYTYVYEASLNSYDIKDL 225
               S    ++   +EL ++++   + +   +  G+TPKLQR+ ++ Y  S N++D  D 
Sbjct: 180 DDLTSQGRVIAGASSELALSVSLPLSIVNMPVTVGLTPKLQRLDSFNYAVSANNFDAGDF 239

Query: 226 --RDNGNGETIFNMDAG-ALWFYGPIRIGFAANNLISREIKTKTITSAVSGNPISYSYDM 282
              D  N +T FN+DAG A+     + +G    NLI RE+ T      V    +S  Y  
Sbjct: 240 DSDDYRNDDTGFNLDAGIAMMPMDGLTLGLVGRNLIERELDT------VESEGVSAIYRA 293

Query: 283 KPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDNTQMIRVGGEIDIMRQLKLRAGYNKN 342
            P  T GA   +  + LS D DL + E++    + T+  R+G E   +  L LR GY ++
Sbjct: 294 GPMVTFGAAFQSGNWQLSTDLDLMDNEKFVGL-EGTKYWRLGAEWHALDWLSLRLGYRQD 352

Query: 343 LAYDNTEGTVTAGIGLSPLNLFQLDLGASYTNENAMGAYI 382
           L  D T    + G G    + F+LDL   + +++ +GA +
Sbjct: 353 L-NDMTADIYSFGTGFQIGSGFKLDLAGMWGDKDTVGAVL 391