Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., putative plasmid transfer protein (RefSeq) from Shewanella loihica PV-4

 Score =  146 bits (369), Expect = 9e-40
 Identities = 121/402 (30%), Positives = 197/402 (49%), Gaps = 30/402 (7%)

Query: 1   MKRISLSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRRN 60
           MK +SL +   L  ++ LA +A+   EAR DAMGG GV + N     F NPAL+AI+   
Sbjct: 1   MKYLSLVIAVLLSGSASLASAASLYNEARSDAMGGTGVAASNREGAAFINPALLAIHAPK 60

Query: 61  DDAG-MILPSIGLSYNDPNDLI-------TDLDKVSDIINQSSKGDYSNIGE-LNKSLTA 111
              G ++LP +G    + ++L           D +   IN S     +N  + L   L +
Sbjct: 61  YSGGAVMLPVLGAEAANIDNLTDKFDALQASYDGLEAAINASDVTGITNYRDMLVADLKS 120

Query: 112 MQGDVLNAELGGVVAFAIPNQFISANVFGKAYTESF-VSPIIDSRVCADDLCELERAKAS 170
           + G+     +G   +  +P + +  ++F K Y ++  V+ I DS +  D L  L+     
Sbjct: 121 LDGENAYGSVGLGFSVVLPTKRMPMSIFYKTYIDAVSVAVIEDSDI--DALTNLDPNNPP 178

Query: 171 SVN-------AVSVGITELGITLAKYQTFLGQHIAFGITPKLQRVYTYVYEASLNSYDIK 223
           +V         V+  I++LG+ L+   + +   +A GI+PKLQR+ TY Y  S N++D  
Sbjct: 179 AVTDLDSQGAVVAGAISDLGVALSFPLSIVNMPVAVGISPKLQRIDTYNYVVSANNFDAD 238

Query: 224 DLRDN--GNGETIFNMDAG-ALWFYGPIRIGFAANNLISREIKTKTITSAVSGNPISYSY 280
           D  DN   N +T+ N+D G A+     + IG +  NL+S+++ T      V      ++Y
Sbjct: 239 DFDDNKYRNDDTVANLDIGVAIQPLERMTIGLSGRNLVSQKLDT------VEAMGRKFTY 292

Query: 281 DMKPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDNTQMIRVGGEIDIMRQLKLRAGYN 340
            ++  YT+G     D F+L+ D DLN  +R+ +  + TQ  R+GGE+     L LR GY 
Sbjct: 293 RVEALYTLGVAYDWDNFSLTTDVDLNGHKRFDEIGE-TQYWRLGGEMRATDWLALRVGYR 351

Query: 341 KNLAYDNTEGTVTAGIGLSPLNLFQLDLGASYTNENAMGAYI 382
            ++  D +    T G G +    F LDL      ++A+G  I
Sbjct: 352 HDMK-DTSSNLYTLGTGFTIGRSFNLDLTGLVGTDDAVGGVI 392