Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., conjugative transfer protein from Marinobacter adhaerens HP15

 Score =  108 bits (270), Expect = 3e-28
 Identities = 104/418 (24%), Positives = 183/418 (43%), Gaps = 55/418 (13%)

Query: 5   SLSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRR--NDD 62
           +L+V  +L+ ++ LA  A+++  AR   MGG GV + + +     NPAL+A      +DD
Sbjct: 9   ALAVSVALISSTALAAPASFS-SARSLGMGGTGVAAASPVDAASTNPALMASDHHGWSDD 67

Query: 63  AGMILPSIGLSYNDPNDLITDLDKVSDIINQ------SSKGDYSNI----GELNKSLTAM 112
            G++LPS+     D  ++   +D + D I +      +   + SN+    G L   L A 
Sbjct: 68  FGLLLPSVNARVADKEEVTDQVDTIQDTIGRLDAAATALPANPSNVQAEAGRLRDQLQAF 127

Query: 113 QGDVLNAELGGVVAFAIPNQFISANVFGKAYTESFVSPIIDSRVCADDLCELERAKASSV 172
             D + A++G  +A A P + +S  VF      + V    D     DD   LE  +  ++
Sbjct: 128 DQDTVRADVGVGLAVAFPGKSLSVGVFVNGNLTATVRGEFDE----DDDARLEAIETGTL 183

Query: 173 ---------------NAVSVGITELGITLAK-YQTFLGQHIAFGITPKLQRVYTYVYEAS 216
                            ++  ++E+G++ A+ ++   G+ I  G++PK   + T+ Y  +
Sbjct: 184 PPPGTPISTDLESRGRVLASAVSEVGVSFAREFELNNGEKIQVGVSPKYVNLRTFQYTET 243

Query: 217 LNSYDIKDLRDNGNGETIFNMDAGALWFYGPIRIGFAANNLISREIKTKTITSAVSG--- 273
           ++ +D     D  +G   F  +  AL +    RI  A        +++KTI   +     
Sbjct: 244 VSGFD----EDEFDGSE-FETEKAALTWTSASRIALARRIGGKPVLQSKTIPMDLKSAAK 298

Query: 274 ----NPISYSYDMKPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDNTQMIRVGGEIDI 329
                       + P+ T G     DY  ++ + DL ++E +  F+ + Q + VG E D 
Sbjct: 299 RPDLGEQERELTLDPRVTAGIAHYGDYHVVTAEADLTKQEGF-GFESDRQWVAVGAEFDA 357

Query: 330 MRQLKLRAGYNKNLAYDNTEGT-------VTAGIGLSPLNLFQLDLGASYTNENAMGA 380
            R  +LR G   N+A D TE          TAG G +     +LDL A Y++ +   A
Sbjct: 358 FRYAQLRVGVRHNIA-DETESAGIEEGTQFTAGAGFNVFGA-RLDLAALYSDADVGAA 413