Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., conjugative transfer protein from Marinobacter adhaerens HP15

 Score =  125 bits (315), Expect = 2e-33
 Identities = 106/426 (24%), Positives = 190/426 (44%), Gaps = 51/426 (11%)

Query: 1   MKRISLSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAI--YR 58
           + ++SL++G S+  +S LA   ++ + AR  AMGG GV      + P  NPA++A   + 
Sbjct: 51  LTKLSLAIGLSIATSSALASPQSF-MSARSFAMGGTGVAVATPSSAPMDNPAMMASDHHS 109

Query: 59  RNDDAGMILPSIGLSYNDPNDLITDLDKVSDIINQ-------------SSKGDYSNIGEL 105
            NDD G++LPS+     D  + +  +D + D+I                 +       +L
Sbjct: 110 WNDDFGLMLPSVNARAADEEETVDQVDDIQDVITDLESLVSGFDPNTDDPQSIQDGAADL 169

Query: 106 NKSLTAMQGDVLNAELGGVVAFAIPNQFISANVFGKA-YTESFVSPIIDSRVCADDLCEL 164
           +  LT    D +    G  +  A+P Q ++  VF  A  T +    + D  + A +    
Sbjct: 170 SDRLTEFDRDTMRVNAGLGLGLAVPGQSLAVGVFTNANLTATVRGDVSDQDITALNAIAT 229

Query: 165 ERAKASSVNAV------------------SVGITELGITLAK-YQTFLGQHIAFGITPKL 205
                   NAV                  +  + E+GI+ A+ ++   G     G++PK 
Sbjct: 230 AATAQDVQNAVDQISTNGTLNLTSQGKILASAVGEVGISFARAFELQDGNSFQLGLSPKY 289

Query: 206 QRVYTYVYEASLNSYDIKDLRDNG--NGETIFNMDAGALWFYGPIR---IGFAANNLISR 260
             + T+ Y  +++ ++  +  D+     ++ FN+D GA + +G       G    NLI  
Sbjct: 290 VELRTFQYTEAVSGFEDDEFDDDQYQTEKSGFNLDVGAAYSFGDSNQWNTGIVVKNLIPM 349

Query: 261 EIKTKTITSAVSGNPISYSYDMKPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDNTQM 320
           E+ +      +     +   D  P  T G    ++Y  ++ + DL ++E +  F+D+TQ 
Sbjct: 350 ELDSAASRPLLGEEVRTLKLD--PMVTAGIAHKSEYHVITAEVDLTKKEAF-GFEDDTQW 406

Query: 321 IRVGGEIDIMRQLKLRAGYNKNLA-YDNTEG-----TVTAGIGLSPLNLFQLDLGASYTN 374
             +G E D  R  +LR G   NLA  D+ +G       TAG+GL+ + + +LD+GA Y++
Sbjct: 407 AALGAEFDAFRYAQLRVGVRHNLASNDDNDGIEEKTQFTAGLGLNIVGV-RLDIGALYSD 465

Query: 375 ENAMGA 380
            +A  A
Sbjct: 466 ADAGAA 471