Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  130 bits (326), Expect = 3e-35
 Identities = 90/227 (39%), Positives = 124/227 (54%), Gaps = 14/227 (6%)

Query: 2   KQTLLLVEDDKNLADGLLVSLEQAGYDCLHAETIADVKQHWDKA--DLVILDRQLPDGDS 59
           K+ +L+V+D+ ++   L   L   GY+ + A    +    +  A  DLV+LD  +P  D 
Sbjct: 5   KEKILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDG 64

Query: 60  VQHLMDWKKIKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLR--- 116
                + +K  D+P+I+LTAL  V D++TGL+ GA+DY+ KPF+  EL ARIR+ LR   
Sbjct: 65  YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124

Query: 117 -SPDSGQDDSKVVTSN-LTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDEL 174
            S  +G   S V+  N + ID   R+V+   E I LT  EF LL  L S  G  F+R E+
Sbjct: 125 KSGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEI 184

Query: 175 LDHVWGY--NHFPTTRTVDTHVLQLRQKL---PGLE--IETLRGVGY 214
           L  VWGY       TR VD H+ +LR KL   PG    I T RG GY
Sbjct: 185 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGY 231