Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (336), Expect = 2e-36
 Identities = 83/220 (37%), Positives = 127/220 (57%), Gaps = 9/220 (4%)

Query: 5   LLLVEDDKNLADGLLVSLEQAGYDCLHAETIADVKQHWDKA--DLVILDRQLPDGDSVQH 62
           +LLVED+ +LA  + ++LE   ++     T+   +Q       DL++LDR L DGD +  
Sbjct: 16  ILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGLTL 75

Query: 63  LMDWKKI-KDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLR-SPDS 120
               ++  K +P +++TA  +  D V GL++GA+DYL KPF+  EL AR++A LR S   
Sbjct: 76  CQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSAQQ 135

Query: 121 GQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180
             D   +    L ID  TREV    + + LT  EFDLL +LA +  +VF+R +LL+ VWG
Sbjct: 136 AADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAVWG 195

Query: 181 YNHFPTTRTVDTHVLQLRQKLPGLE-----IETLRGVGYK 215
           Y++     TV++H+ +LR KL         ++T+ GVGYK
Sbjct: 196 YSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYK 235