Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., two component transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  128 bits (321), Expect = 1e-34
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 13/226 (5%)

Query: 1   MKQTLLLVEDDKNLADGLLVSLEQAGYDCLHAE----TIADVKQHWDKADLVILDRQLPD 56
           M   +L+VED+  + + L   +EQ G+    AE     IA +K+ +   DL++LD   P 
Sbjct: 1   MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYP--DLILLDWMFPG 58

Query: 57  GDSVQHLMDWKK---IKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRA 113
           G  +Q     K+    + IP+I+LTA    +DKV GL+ GA+DY+TKPF+  EL ARI+A
Sbjct: 59  GSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKA 118

Query: 114 QLRSPDSGQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDE 173
            LR     + +  +    L +D  +  V      + +  TEF LL F  ++  RV++R++
Sbjct: 119 VLRRSAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQ 178

Query: 174 LLDHVWGYNHFPTTRTVDTHVLQLRQKLP----GLEIETLRGVGYK 215
           LLD+VWG N +   RTVD H+ +LR+ +        I+T+RG GY+
Sbjct: 179 LLDNVWGTNVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYR 224