Pairwise Alignments

Query, 499 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 41/234 (17%)

Query: 299 LTHELRTPIASLS----LTVEGFRREFEHLPESLYDEFRRLCEDSRRLRQLAEASKDYLQ 354
           ++HELRTP+ S+S    L V G        P S+         +S RL  L     D L 
Sbjct: 502 VSHELRTPLTSISGALGLIVGG---ALGSAPASMQQMLEIAYRNSLRLGHLIN---DLLD 555

Query: 355 SDSKPLASDWVPSVEEWLQYKVEEEFSGNVTLKLNQDIAAKLN-----VYW-----LGTC 404
            +            E  L   +EE  + N  L     I   L+     + W     L   
Sbjct: 556 MEKIAAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLDHPVDVLVWVDGMRLQQV 615

Query: 405 VDNLLRNAVKYGVAPVTLEVITQTNL----VTFKVTDQG-----SLTHRDWRHLRKPFVS 455
           + N L NAVK+   P   E+   ++L    V   VTDQG     +   R +    +   S
Sbjct: 616 LGNFLSNAVKF--TPQGGEIRLHSSLRGPRVRISVTDQGPGIPEAFRSRVFEKFAQADAS 673

Query: 456 ----KSGLGLGLTIVESMVGRMGGKMSLEGPP---TTFILEIPCE---TDTASR 499
               KSG GLGL I + ++ RMGG +  + PP   TTF  E+P +   ++T SR
Sbjct: 674 DSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPIQQLASETDSR 727