Pairwise Alignments

Query, 499 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 20/207 (9%)

Query: 289 MRSRMLILQILTHELRTPIASLSLTVEGFRREFEHLPESLYDEFRRLCEDSRRLRQLA-- 346
           ++++  ++  ++HELRTP+  L L++   R++ +   E+      R+  ++ +L QL   
Sbjct: 233 VKNQQRLMGDISHELRTPLTRLQLSLALARKKGQQTTET-----DRIAYEAEQLEQLIAE 287

Query: 347 --EASKDYLQSDSKPLASDWVPSVEEWLQYKVEEEFSGNVTLKLNQDIAAKLNVY--WLG 402
             E S+  L ++   +      S+ + L     E       + ++ D A +L+ Y   L 
Sbjct: 288 LLELSRVKLSTNETKVCLGLAESLSQVLDDAEFEADQQGKKITIDIDEAIELSHYPKSLS 347

Query: 403 TCVDNLLRNAVKYGVAPVTLEVITQTNLVTFKVTDQG-SLTHRDWRHLRKPFV------- 454
             ++NLLRNA++Y  + + L     +  V   + D G  +   +   + KPF        
Sbjct: 348 RAIENLLRNAIRYAKSDIHLHASQTSGQVQITIKDDGPGIDPAELESIFKPFYRPDSARQ 407

Query: 455 -SKSGLGLGLTIVESMVGRMGGKMSLE 480
               G GLGL I E+ +    GK+  E
Sbjct: 408 RESGGWGLGLAITEAAISAHKGKIKAE 434